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The map label for this gene is rpl18p

Identifier: 148642802

GI number: 148642802

Start: 712226

End: 712807

Strand: Reverse

Name: rpl18p

Synonym: Msm_0742

Alternate gene names: 148642802

Gene position: 712807-712226 (Counterclockwise)

Preceding gene: 148642803

Following gene: 148642801

Centisome position: 38.46

GC content: 35.05

Gene sequence:

>582_bases
GTGGCTCAAGGATCAAATTATAAAGTACCATTTAGAAGGAGAAGAGAAGGAAAAACTGATTACGCAGCTAGGATGAAATT
AGTCGATTATGACAAATCTCGTTTAGTTGTAAGACTTTCTAATGCTCATGCAACTGTTCAAGTTATTGATTATGCTCCTG
AAGGAGATATTACCTTAGCATCTGCAGTAAGTAAACAATTAGCTAATTACGGTTACTTAGGTGGGGCAAGTAATACTTCT
GCAGTATATTTAACTGGTTACCTTTGTGCTAAAAGAGCATTAGCTAAAGGTGTTGACTCTGCAATTTTAGACATTGGTTT
AAAATCTGCTATTAAAGGATCTAAAGTATTTGCAGCTCTTAAAGGTGCTGTAGATGCAGGTTTAGATATCCCTTATGGTG
AAGCTGTTTTACCAGATGAATCCCGTATTAATGGAGAACATGTAGCAAACTATGCTGAGTCTTTAGATGATGATGAAATT
GCAAAATTATTCTCAAAGTATTTAGAAAGAGGTCTTCAACCAGCAGATTTACCTAAAAACTTTGAAGAAACCAAAAAGAA
TATCGATGAGGCAGAGGAATAA

Upstream 100 bases:

>100_bases
GTAAATTATATAAAATGGCTAAGGGTGGTGCTTTCAGAAGTAAATCTTACATGAAAACATATGCTCGTGACCATGATTTA
ATTAAATAGGAGGAATAAAC

Downstream 100 bases:

>100_bases
CTATGAGTTTTAATATAGATGAATGGGAACCTAAAACTAAAATGGGTAAATTAGTTAAAGAAGGAACCATTACAGATATT
GATGAAATCTTTGAAAAAGG

Product: 50S ribosomal protein L18P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MAQGSNYKVPFRRRREGKTDYAARMKLVDYDKSRLVVRLSNAHATVQVIDYAPEGDITLASAVSKQLANYGYLGGASNTS
AVYLTGYLCAKRALAKGVDSAILDIGLKSAIKGSKVFAALKGAVDAGLDIPYGEAVLPDESRINGEHVANYAESLDDDEI
AKLFSKYLERGLQPADLPKNFEETKKNIDEAEE

Sequences:

>Translated_193_residues
MAQGSNYKVPFRRRREGKTDYAARMKLVDYDKSRLVVRLSNAHATVQVIDYAPEGDITLASAVSKQLANYGYLGGASNTS
AVYLTGYLCAKRALAKGVDSAILDIGLKSAIKGSKVFAALKGAVDAGLDIPYGEAVLPDESRINGEHVANYAESLDDDEI
AKLFSKYLERGLQPADLPKNFEETKKNIDEAEE
>Mature_192_residues
AQGSNYKVPFRRRREGKTDYAARMKLVDYDKSRLVVRLSNAHATVQVIDYAPEGDITLASAVSKQLANYGYLGGASNTSA
VYLTGYLCAKRALAKGVDSAILDIGLKSAIKGSKVFAALKGAVDAGLDIPYGEAVLPDESRINGEHVANYAESLDDDEIA
KLFSKYLERGLQPADLPKNFEETKKNIDEAEE

Specific function: This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance

COG id: COG0256

COG function: function code J; Ribosomal protein L18

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18P family

Homologues:

Organism=Homo sapiens, GI14591909, Length=234, Percent_Identity=33.7606837606838, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17534333, Length=231, Percent_Identity=35.0649350649351, Blast_Score=120, Evalue=4e-28,
Organism=Saccharomyces cerevisiae, GI6325126, Length=217, Percent_Identity=38.2488479262673, Blast_Score=124, Evalue=1e-29,
Organism=Drosophila melanogaster, GI116007384, Length=232, Percent_Identity=36.2068965517241, Blast_Score=128, Evalue=2e-30,
Organism=Drosophila melanogaster, GI116007382, Length=232, Percent_Identity=36.2068965517241, Blast_Score=128, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL18_METS3 (A5UL69)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001273315.1
- ProteinModelPortal:   A5UL69
- SMR:   A5UL69
- STRING:   A5UL69
- GeneID:   5216961
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_0742
- eggNOG:   arNOG08828
- HOGENOM:   HBG391676
- OMA:   SRVYAAL
- ProtClustDB:   PRK08569
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01337_A
- InterPro:   IPR005484
- InterPro:   IPR005485
- PANTHER:   PTHR23410

Pfam domain/function: PF00861 Ribosomal_L18p

EC number: NA

Molecular weight: Translated: 20967; Mature: 20836

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGSNYKVPFRRRREGKTDYAARMKLVDYDKSRLVVRLSNAHATVQVIDYAPEGDITLA
CCCCCCCCCCHHHHCCCCCCHHHHHHHEECCCCEEEEEECCCCEEEEEEEECCCCCCHHH
SAVSKQLANYGYLGGASNTSAVYLTGYLCAKRALAKGVDSAILDIGLKSAIKGSKVFAAL
HHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
KGAVDAGLDIPYGEAVLPDESRINGEHVANYAESLDDDEIAKLFSKYLERGLQPADLPKN
HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCC
FEETKKNIDEAEE
HHHHHHHHHCCCC
>Mature Secondary Structure 
AQGSNYKVPFRRRREGKTDYAARMKLVDYDKSRLVVRLSNAHATVQVIDYAPEGDITLA
CCCCCCCCCHHHHCCCCCCHHHHHHHEECCCCEEEEEECCCCEEEEEEEECCCCCCHHH
SAVSKQLANYGYLGGASNTSAVYLTGYLCAKRALAKGVDSAILDIGLKSAIKGSKVFAAL
HHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
KGAVDAGLDIPYGEAVLPDESRINGEHVANYAESLDDDEIAKLFSKYLERGLQPADLPKN
HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCC
FEETKKNIDEAEE
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA