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The map label for this gene is rpl39e

Identifier: 148642766

GI number: 148642766

Start: 678104

End: 678259

Strand: Reverse

Name: rpl39e

Synonym: Msm_0706

Alternate gene names: 148642766

Gene position: 678259-678104 (Counterclockwise)

Preceding gene: 148642767

Following gene: 148642765

Centisome position: 36.6

GC content: 31.41

Gene sequence:

>156_bases
ATGAGTAGAAATAAACCATTAGCTAAAAAATTGAGAATGGCAAAAGCAAATAAACAAAACAGAAGAATTCCAATCTGGGC
TTATGCTAAGACTAACCGTAAACTTAGATACAGACCTAAACCTAGACATTGGAGAAGAAACAGTCTTAAATTATAA

Upstream 100 bases:

>100_bases
AATTGATGAAAAAGGAGGAAATTCATTGGATATTTTCCCTGAGCATTATCAAACTCGTGTTACTGGGTATAAAAAATAAT
TATTATTATAAGGTGAGAAA

Downstream 100 bases:

>100_bases
GGGGGATTTTTCATGGAAAGAGTTTATACAATTCCACTTAGAAACGCAAAAAAAGTCAAAAGGACTATTAGAGCTCCTAG
AGCTATCAGAGAAGTACAAA

Product: ribosomal protein L39a

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 51; Mature: 50

Protein sequence:

>51_residues
MSRNKPLAKKLRMAKANKQNRRIPIWAYAKTNRKLRYRPKPRHWRRNSLKL

Sequences:

>Translated_51_residues
MSRNKPLAKKLRMAKANKQNRRIPIWAYAKTNRKLRYRPKPRHWRRNSLKL
>Mature_50_residues
SRNKPLAKKLRMAKANKQNRRIPIWAYAKTNRKLRYRPKPRHWRRNSLKL

Specific function: Unknown

COG id: COG2167

COG function: function code J; Ribosomal protein L39E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L39e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL39_METS3 (A5UL33)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001273279.1
- ProteinModelPortal:   A5UL33
- SMR:   A5UL33
- STRING:   A5UL33
- GeneID:   5216000
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_0706
- eggNOG:   arNOG13954
- HOGENOM:   HBG727906
- OMA:   RNKPLGK
- ProtClustDB:   CLSK2791169
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00629
- InterPro:   IPR000077
- Gene3D:   G3DSA:1.10.1620.10
- PANTHER:   PTHR19970

Pfam domain/function: PF00832 Ribosomal_L39; SSF48662 Ribosomal_L39

EC number: NA

Molecular weight: Translated: 6342; Mature: 6211

Theoretical pI: Translated: 12.88; Mature: 12.88

Prosite motif: PS00051 RIBOSOMAL_L39E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRNKPLAKKLRMAKANKQNRRIPIWAYAKTNRKLRYRPKPRHWRRNSLKL
CCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
SRNKPLAKKLRMAKANKQNRRIPIWAYAKTNRKLRYRPKPRHWRRNSLKL
CCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA