Click here to switch to the map view.

The map label for this gene is rtcB [C]

Identifier: 148642726

GI number: 148642726

Start: 644664

End: 646112

Strand: Reverse

Name: rtcB [C]

Synonym: Msm_0666

Alternate gene names: 148642726

Gene position: 646112-644664 (Counterclockwise)

Preceding gene: 148642727

Following gene: 148642725

Centisome position: 34.87

GC content: 37.96

Gene sequence:

>1449_bases
ATGAGTATTAAAGATAACATTAAAAAAGTTAGAGATAACGTATACGAAGTTCCAGGAAGCGTTAATAAAAAAATGAGAGC
TTCTGGAAGATTGTATCTTGATGATGAAAGTTTTGAAGCTTTGGAAGATGGGGCTATTGACCAGATTGTAAATATTGCAT
GTCTTCCAGGTGTTCACAGATATGCAATCGGTCTGCCTGACATTCATTTCGGATATGGATTTCCAATAGGTGGGGTGGCA
GCATTCAATGAAAAAAATGGAATTGTCTCTCCTGGAGGAGTAGGTTTTGACATTAACTGTGGAGTCAGATTAATAAAAAC
CAATCTTAAACAAGCAGACATTGAAGACAAGCTTGATGAATTAATTGAAGCATTGTTTAAAAACATTCCGTCTGGTGTAG
GAAGCAAAGGAAAAATCAAGCTTAAAGAAAATGAAATAGATGATGTTTTAAATTTCGGAGCTGAATGGGCTGTAGAAAAT
GGCTACGGGTGGAAAGAAGATTTGGAAGTTTTAGAAGAAAACGGAAGAATCAAAGAAGCAGACTCAGCTAAAGTCAGTGA
CAAAGCTAAAAGAAGGGGAATACCTCAACTTGGTTCTTTAGGTTCTGGAAATCACTTTTTAGAAATTCAGGTTGTTGATG
AAATATATAATGATGAAGTGGCTGGTGTATACGGACTTGAAAAAGGAATGGTTGTAATAATGATTCACAGCGGTTCAAGA
GGCTGCGGACATCAGGTATGTTCTGATTATTTAAGAGTAATGGATAAAGCTTATAAAAATCACCAAATAGATCTTGCAGA
CAGACAACTGGCCTGTGCACCATTTGATTCAAGGGAAGCTCAGGACTACTTAAAAGCTATGTATGCTGCAGCTAATTATG
CATGGGCAAACAGACAGATGATGACTCATTGGATAAGGGAAACCTTTGAAGACATTTTAGGAAAATCCGCTAAAGATATG
GAAATGGACATTGTTTATGATGTAGCTCACAACATTGCTAAACAGGAAACACACAAATTCAAAGGCAATGACATTAAACT
GGTGGTACACAGAAAAGGAGCTACCCGTGCATTCGGACCTGGAAGTGAAGAAATTCCTGAAAAATACAGGGAAGTTGGTC
AGCCGGTATTGATTCCTGGAACAATGGGAACAGCATCCTATGTATTGCATGGAACACAAACAGCAATGGAAGAAACATTC
GGATCCACTGCACATGGTGCCGGAAGAGTTTTATCAAGGTCACAGGCTAAAAAAGACTACAAACCTGAAGAAATCAAAAA
CACTTTGGCTGCAAACGGAGTAAAAATCAGAGCTACAACTGAAAATGTAATAGCTGAAGAGGCACCTGGGGCATACAAAG
ATGTGGACAGTGTAGTTAAAATATCTGACAGTACAGGAATAGCTAAACTTGTTGCAAAAGTAAAACCGTTAGCTGTTACA
AAAGGATAA

Upstream 100 bases:

>100_bases
TTATTTTTTGGAGTAATTTTTTTATTAATTTCATTCTGTTTTCTACCAAAAAATTATTTATTGTCCTATTATAAATATTA
TAAAATAGTTTGTGATTTTT

Downstream 100 bases:

>100_bases
GATAAGATGATTGGAATTATTGGCGGCAGCGGAGTTTATGAAATAACTCAGAAGGCAGACAGTGTTGAAAAAAAGTTAGT
CAAAACAGACTATGGGGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 481

Protein sequence:

>482_residues
MSIKDNIKKVRDNVYEVPGSVNKKMRASGRLYLDDESFEALEDGAIDQIVNIACLPGVHRYAIGLPDIHFGYGFPIGGVA
AFNEKNGIVSPGGVGFDINCGVRLIKTNLKQADIEDKLDELIEALFKNIPSGVGSKGKIKLKENEIDDVLNFGAEWAVEN
GYGWKEDLEVLEENGRIKEADSAKVSDKAKRRGIPQLGSLGSGNHFLEIQVVDEIYNDEVAGVYGLEKGMVVIMIHSGSR
GCGHQVCSDYLRVMDKAYKNHQIDLADRQLACAPFDSREAQDYLKAMYAAANYAWANRQMMTHWIRETFEDILGKSAKDM
EMDIVYDVAHNIAKQETHKFKGNDIKLVVHRKGATRAFGPGSEEIPEKYREVGQPVLIPGTMGTASYVLHGTQTAMEETF
GSTAHGAGRVLSRSQAKKDYKPEEIKNTLAANGVKIRATTENVIAEEAPGAYKDVDSVVKISDSTGIAKLVAKVKPLAVT
KG

Sequences:

>Translated_482_residues
MSIKDNIKKVRDNVYEVPGSVNKKMRASGRLYLDDESFEALEDGAIDQIVNIACLPGVHRYAIGLPDIHFGYGFPIGGVA
AFNEKNGIVSPGGVGFDINCGVRLIKTNLKQADIEDKLDELIEALFKNIPSGVGSKGKIKLKENEIDDVLNFGAEWAVEN
GYGWKEDLEVLEENGRIKEADSAKVSDKAKRRGIPQLGSLGSGNHFLEIQVVDEIYNDEVAGVYGLEKGMVVIMIHSGSR
GCGHQVCSDYLRVMDKAYKNHQIDLADRQLACAPFDSREAQDYLKAMYAAANYAWANRQMMTHWIRETFEDILGKSAKDM
EMDIVYDVAHNIAKQETHKFKGNDIKLVVHRKGATRAFGPGSEEIPEKYREVGQPVLIPGTMGTASYVLHGTQTAMEETF
GSTAHGAGRVLSRSQAKKDYKPEEIKNTLAANGVKIRATTENVIAEEAPGAYKDVDSVVKISDSTGIAKLVAKVKPLAVT
KG
>Mature_481_residues
SIKDNIKKVRDNVYEVPGSVNKKMRASGRLYLDDESFEALEDGAIDQIVNIACLPGVHRYAIGLPDIHFGYGFPIGGVAA
FNEKNGIVSPGGVGFDINCGVRLIKTNLKQADIEDKLDELIEALFKNIPSGVGSKGKIKLKENEIDDVLNFGAEWAVENG
YGWKEDLEVLEENGRIKEADSAKVSDKAKRRGIPQLGSLGSGNHFLEIQVVDEIYNDEVAGVYGLEKGMVVIMIHSGSRG
CGHQVCSDYLRVMDKAYKNHQIDLADRQLACAPFDSREAQDYLKAMYAAANYAWANRQMMTHWIRETFEDILGKSAKDME
MDIVYDVAHNIAKQETHKFKGNDIKLVVHRKGATRAFGPGSEEIPEKYREVGQPVLIPGTMGTASYVLHGTQTAMEETFG
STAHGAGRVLSRSQAKKDYKPEEIKNTLAANGVKIRATTENVIAEEAPGAYKDVDSVVKISDSTGIAKLVAKVKPLAVTK
G

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=494, Percent_Identity=47.5708502024291, Blast_Score=471, Evalue=1e-133,
Organism=Escherichia coli, GI2367224, Length=446, Percent_Identity=30.0448430493274, Blast_Score=164, Evalue=8e-42,
Organism=Caenorhabditis elegans, GI17506665, Length=496, Percent_Identity=46.1693548387097, Blast_Score=458, Evalue=1e-129,
Organism=Drosophila melanogaster, GI24585217, Length=494, Percent_Identity=48.7854251012146, Blast_Score=461, Evalue=1e-130,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 52825; Mature: 52693

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKDNIKKVRDNVYEVPGSVNKKMRASGRLYLDDESFEALEDGAIDQIVNIACLPGVHR
CCCHHHHHHHHHHHHHCCCCCCHHHHHCCCEEECCCHHHHHHCCCHHHHHHHHHCCCCHH
YAIGLPDIHFGYGFPIGGVAAFNEKNGIVSPGGVGFDINCGVRLIKTNLKQADIEDKLDE
HCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEECCCCEEEEECCCHHCCHHHHHHH
LIEALFKNIPSGVGSKGKIKLKENEIDDVLNFGAEWAVENGYGWKEDLEVLEENGRIKEA
HHHHHHHHCCCCCCCCCEEEECCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCEECC
DSAKVSDKAKRRGIPQLGSLGSGNHFLEIQVVDEIYNDEVAGVYGLEKGMVVIMIHSGSR
CCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHHHCCCCCCEEECCCCEEEEEEECCCC
GCGHQVCSDYLRVMDKAYKNHQIDLADRQLACAPFDSREAQDYLKAMYAAANYAWANRQM
CHHHHHHHHHHHHHHHHHCCCCEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
MTHWIRETFEDILGKSAKDMEMDIVYDVAHNIAKQETHKFKGNDIKLVVHRKGATRAFGP
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC
GSEEIPEKYREVGQPVLIPGTMGTASYVLHGTQTAMEETFGSTAHGAGRVLSRSQAKKDY
CCHHHHHHHHHHCCCEEEECCCCCHHHEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
KPEEIKNTLAANGVKIRATTENVIAEEAPGAYKDVDSVVKISDSTGIAKLVAKVKPLAVT
CHHHHHHHHHHCCEEEEEEHHHHHHHCCCCCHHHHHHHEEECCCCCHHHHHHHHCCEEEC
KG
CC
>Mature Secondary Structure 
SIKDNIKKVRDNVYEVPGSVNKKMRASGRLYLDDESFEALEDGAIDQIVNIACLPGVHR
CCHHHHHHHHHHHHHCCCCCCHHHHHCCCEEECCCHHHHHHCCCHHHHHHHHHCCCCHH
YAIGLPDIHFGYGFPIGGVAAFNEKNGIVSPGGVGFDINCGVRLIKTNLKQADIEDKLDE
HCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEECCCCEEEEECCCHHCCHHHHHHH
LIEALFKNIPSGVGSKGKIKLKENEIDDVLNFGAEWAVENGYGWKEDLEVLEENGRIKEA
HHHHHHHHCCCCCCCCCEEEECCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCEECC
DSAKVSDKAKRRGIPQLGSLGSGNHFLEIQVVDEIYNDEVAGVYGLEKGMVVIMIHSGSR
CCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHHHCCCCCCEEECCCCEEEEEEECCCC
GCGHQVCSDYLRVMDKAYKNHQIDLADRQLACAPFDSREAQDYLKAMYAAANYAWANRQM
CHHHHHHHHHHHHHHHHHCCCCEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
MTHWIRETFEDILGKSAKDMEMDIVYDVAHNIAKQETHKFKGNDIKLVVHRKGATRAFGP
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC
GSEEIPEKYREVGQPVLIPGTMGTASYVLHGTQTAMEETFGSTAHGAGRVLSRSQAKKDY
CCHHHHHHHHHHCCCEEEECCCCCHHHEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
KPEEIKNTLAANGVKIRATTENVIAEEAPGAYKDVDSVVKISDSTGIAKLVAKVKPLAVT
CHHHHHHHHHHCCEEEEEEHHHHHHHCCCCCHHHHHHHEEECCCCCHHHHHHHHCCEEEC
KG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]