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The map label for this gene is cmoA [H]

Identifier: 148642550

GI number: 148642550

Start: 464942

End: 465604

Strand: Reverse

Name: cmoA [H]

Synonym: Msm_0490

Alternate gene names: 148642550

Gene position: 465604-464942 (Counterclockwise)

Preceding gene: 148642551

Following gene: 148642549

Centisome position: 25.12

GC content: 29.56

Gene sequence:

>663_bases
ATGTCTGTTGTAAATAAGTTCAACCAAAAAGCTAAAGAATATGATAGTGAAAGAAGAGCTTTAATACCATGTTTTGATGA
TTTTTATGGAATAGCTATTGATTGTATTGATTTTAAAGGAGATAATCCGAAAGTTTTAGATTTAGGTGCTGGAACTGGTA
TTTTATCTCAATTTTTGCTTGAAAAATATCCAAATGCAGAAATTGTCCTTATTGACCTGGCTGAGAAAATGCTAAAAGAG
GCCGAAAAAAGATTTGAAGGAAATGATAATATTTCATTTATATGTGACGATTATATAACTCATGAATTCAACACAAAGTT
TGATATAATCATATCTTCTCTTTCCATTCATCATTTGACTGGAACGGAAAAGAAAGTTTTAATTGAAAAGTATTATGATT
TATTAAATGATGGTGGAAACTTTGTCAATGCAGATCAGGTTTTAAATCCTAATAAAGGTGTTGAAGATTATTTTAAATCA
AAACTTGATGAACATACTGGTGAAATTAGTGAGAAAGCTTATGGAGAGGCTAAAATTAGGAGAACTTATGATAAACCCAG
CTCTGTGGATTTTCAGTTGGAATGTTTAAAAAATGCAGGTTTTGACCGTGTTGGAATTCCTTATAAATATTATGTTTTTG
CAGTATTTTGGGCTAAAAAATGA

Upstream 100 bases:

>100_bases
GGATTATGCTAAATTGGGAATTGATATAATTTCTCTTGGTGCTCTGACTCATTCAAGCAGAAGTTTAAACTTTTCTTTAA
GAATACTAGAGGATTAAAGA

Downstream 100 bases:

>100_bases
TAAATTTAATAATATATAAAAATCATAATTATTAAAGATAGATGATTATTATTTTTTTTACAATGGTGATTTAATGGTAA
AAATGGCTAAATTAGCTTTG

Product: SAM-dependent methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MSVVNKFNQKAKEYDSERRALIPCFDDFYGIAIDCIDFKGDNPKVLDLGAGTGILSQFLLEKYPNAEIVLIDLAEKMLKE
AEKRFEGNDNISFICDDYITHEFNTKFDIIISSLSIHHLTGTEKKVLIEKYYDLLNDGGNFVNADQVLNPNKGVEDYFKS
KLDEHTGEISEKAYGEAKIRRTYDKPSSVDFQLECLKNAGFDRVGIPYKYYVFAVFWAKK

Sequences:

>Translated_220_residues
MSVVNKFNQKAKEYDSERRALIPCFDDFYGIAIDCIDFKGDNPKVLDLGAGTGILSQFLLEKYPNAEIVLIDLAEKMLKE
AEKRFEGNDNISFICDDYITHEFNTKFDIIISSLSIHHLTGTEKKVLIEKYYDLLNDGGNFVNADQVLNPNKGVEDYFKS
KLDEHTGEISEKAYGEAKIRRTYDKPSSVDFQLECLKNAGFDRVGIPYKYYVFAVFWAKK
>Mature_219_residues
SVVNKFNQKAKEYDSERRALIPCFDDFYGIAIDCIDFKGDNPKVLDLGAGTGILSQFLLEKYPNAEIVLIDLAEKMLKEA
EKRFEGNDNISFICDDYITHEFNTKFDIIISSLSIHHLTGTEKKVLIEKYYDLLNDGGNFVNADQVLNPNKGVEDYFKSK
LDEHTGEISEKAYGEAKIRRTYDKPSSVDFQLECLKNAGFDRVGIPYKYYVFAVFWAKK

Specific function: Catalyzes the conversion of 5-methoxyuridine (mo5U) to uridine-5-oxyacetic acid (cmo5U) at position 34 in tRNA. May also participate in the methylation of uridine-5-oxyacetic acid (cmo5U) to uridine-5-oxyacetic acid methyl ester (mcmo5U) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013217
- InterPro:   IPR005271 [H]

Pfam domain/function: PF08242 Methyltransf_12 [H]

EC number: NA

Molecular weight: Translated: 25206; Mature: 25075

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVVNKFNQKAKEYDSERRALIPCFDDFYGIAIDCIDFKGDNPKVLDLGAGTGILSQFLL
CCHHHHHHHHHHHHCCCCCEECCCHHCCCCEEEEEEEECCCCCEEEEECCCHHHHHHHHH
EKYPNAEIVLIDLAEKMLKEAEKRFEGNDNISFICDDYITHEFNTKFDIIISSLSIHHLT
HHCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCEEEEEEEEHEEEEEC
GTEKKVLIEKYYDLLNDGGNFVNADQVLNPNKGVEDYFKSKLDEHTGEISEKAYGEAKIR
CCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHCHHHHH
RTYDKPSSVDFQLECLKNAGFDRVGIPYKYYVFAVFWAKK
CCCCCCCCCCEEHEEHHCCCCCCCCCCCEEEEEEEEEECC
>Mature Secondary Structure 
SVVNKFNQKAKEYDSERRALIPCFDDFYGIAIDCIDFKGDNPKVLDLGAGTGILSQFLL
CHHHHHHHHHHHHCCCCCEECCCHHCCCCEEEEEEEECCCCCEEEEECCCHHHHHHHHH
EKYPNAEIVLIDLAEKMLKEAEKRFEGNDNISFICDDYITHEFNTKFDIIISSLSIHHLT
HHCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCEEEEEEEEHEEEEEC
GTEKKVLIEKYYDLLNDGGNFVNADQVLNPNKGVEDYFKSKLDEHTGEISEKAYGEAKIR
CCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHCHHHHH
RTYDKPSSVDFQLECLKNAGFDRVGIPYKYYVFAVFWAKK
CCCCCCCCCCEEHEEHHCCCCCCCCCCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA