| Definition | Methanobrevibacter smithii ATCC 35061 chromosome, complete genome. |
|---|---|
| Accession | NC_009515 |
| Length | 1,853,160 |
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The map label for this gene is 148642480
Identifier: 148642480
GI number: 148642480
Start: 402365
End: 402865
Strand: Reverse
Name: 148642480
Synonym: Msm_0420
Alternate gene names: NA
Gene position: 402865-402365 (Counterclockwise)
Preceding gene: 148642484
Following gene: 148642471
Centisome position: 21.74
GC content: 32.73
Gene sequence:
>501_bases ATGCTGCCGACACAAATATTAAAAATCATATTTGGATGTTTATTGTTGTTTATAGCTATTCGTAACTTGATGTCTGCCGA TAAAAAGACTTCAAAAGCTAGAGCCAAATTTAATTTAATAAACATAGCTGTTGTAGGGGTATTGGTTGGAATTTCCTCAG GTCTTTTAGGTGTTGGTGGAGGAGTATTTATAATTCTAATTTTAACTGTAATATTCGGATTTTCAATGATTGAAGCTATC GGAATTTCATCAGTATTTATTAGCCTAACAGCTATTGGAGGGACCGTATCATATATAATATCTGGCTGGGGAGTTAATCC GTTTCCGTATTCATTGGGTTATGTAAGTTTAGTTAATTTTGCAGTTATCGCAATGTTTTCAGTACCTTTAGCTTATTATG GTGCAAAAATAGCTCATAAGGTTCCTGAAAAAAGATTAAAACAGATATTTGGTTTGGTGGTTTTGTATATTTCACTTAAA ATGCTGGGAGTAGTTCCTTAA
Upstream 100 bases:
>100_bases ATCCAGGCATTTAAAAGTTATGGACAATATTTTAAAACCAGGAATAAGACTGGGGTTATTCGGTATTGTTGGGGGCATAT TGGGCGGTCTGATTGCATCA
Downstream 100 bases:
>100_bases TCTTTAAATTTAACTCCCATTCCCATTGCAGTAATTTGAAAACTGTCTCCACCTAAACCGATTAACCCATATTCTATTTT TAAATCCAGGATTCCATTTC
Product: permease
Products: NA
Alternate protein names: Integral Membrane Protein
Number of amino acids: Translated: 166; Mature: 166
Protein sequence:
>166_residues MLPTQILKIIFGCLLLFIAIRNLMSADKKTSKARAKFNLINIAVVGVLVGISSGLLGVGGGVFIILILTVIFGFSMIEAI GISSVFISLTAIGGTVSYIISGWGVNPFPYSLGYVSLVNFAVIAMFSVPLAYYGAKIAHKVPEKRLKQIFGLVVLYISLK MLGVVP
Sequences:
>Translated_166_residues MLPTQILKIIFGCLLLFIAIRNLMSADKKTSKARAKFNLINIAVVGVLVGISSGLLGVGGGVFIILILTVIFGFSMIEAI GISSVFISLTAIGGTVSYIISGWGVNPFPYSLGYVSLVNFAVIAMFSVPLAYYGAKIAHKVPEKRLKQIFGLVVLYISLK MLGVVP >Mature_166_residues MLPTQILKIIFGCLLLFIAIRNLMSADKKTSKARAKFNLINIAVVGVLVGISSGLLGVGGGVFIILILTVIFGFSMIEAI GISSVFISLTAIGGTVSYIISGWGVNPFPYSLGYVSLVNFAVIAMFSVPLAYYGAKIAHKVPEKRLKQIFGLVVLYISLK MLGVVP
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17699; Mature: 17699
Theoretical pI: Translated: 10.54; Mature: 10.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPTQILKIIFGCLLLFIAIRNLMSADKKTSKARAKFNLINIAVVGVLVGISSGLLGVGG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCH GVFIILILTVIFGFSMIEAIGISSVFISLTAIGGTVSYIISGWGVNPFPYSLGYVSLVNF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH AVIAMFSVPLAYYGAKIAHKVPEKRLKQIFGLVVLYISLKMLGVVP HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLPTQILKIIFGCLLLFIAIRNLMSADKKTSKARAKFNLINIAVVGVLVGISSGLLGVGG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCH GVFIILILTVIFGFSMIEAIGISSVFISLTAIGGTVSYIISGWGVNPFPYSLGYVSLVNF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH AVIAMFSVPLAYYGAKIAHKVPEKRLKQIFGLVVLYISLKMLGVVP HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA