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The map label for this gene is nifU [H]

Identifier: 148642323

GI number: 148642323

Start: 246141

End: 246509

Strand: Reverse

Name: nifU [H]

Synonym: Msm_0263

Alternate gene names: 148642323

Gene position: 246509-246141 (Counterclockwise)

Preceding gene: 148642324

Following gene: 148642322

Centisome position: 13.3

GC content: 37.13

Gene sequence:

>369_bases
ATGTACAGTGAAAAAGTTATGGATCATTTTGCAAATCCAAGAAATTCAGGAGAAATGGAAAATCCTGACGGAGTAGGAAC
AGTAGGAAACCCAACCTGCGGGGATTTGATGACTATCTATATTAAAGTTAAGGATGATGTTATCACTGATATTTCATTCC
AAACCTTCGGTTGCGGAGCAGCTATTGCTACAAGCAGTATGATTACTGAAATAGCTATTGGCAAAACATTGGAAGAAGCA
TTAAAAATTAGCCGTAATGATGTTGCAGAAGAATTGGACGGTCTTCCACCAGTTAAAATGCACTGTTCCAATTTGGCTGC
AGATGCACTTAAGGCAGCTATTGATAACTATTATGAAAAGTCTAATTAA

Upstream 100 bases:

>100_bases
AGAGTCAGTAGCTACTTTAAGGAAAATGTCTCCTTTATGGAATTCTGATGAAAAATATGAAGAAATGATGGGTCAAAGTA
AATAAATTAAGGTGTTAAAT

Downstream 100 bases:

>100_bases
ACTTGTTCAGGATTTACAATCATAATTTTCCTTGATTGGCAAGTGGTGGCGTTAATCTTTTAAAAAGTTAAACCGCCAAG
CTATTTGAATATTAAAAAAT

Product: nitrogen fixation protein, NifU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MYSEKVMDHFANPRNSGEMENPDGVGTVGNPTCGDLMTIYIKVKDDVITDISFQTFGCGAAIATSSMITEIAIGKTLEEA
LKISRNDVAEELDGLPPVKMHCSNLAADALKAAIDNYYEKSN

Sequences:

>Translated_122_residues
MYSEKVMDHFANPRNSGEMENPDGVGTVGNPTCGDLMTIYIKVKDDVITDISFQTFGCGAAIATSSMITEIAIGKTLEEA
LKISRNDVAEELDGLPPVKMHCSNLAADALKAAIDNYYEKSN
>Mature_122_residues
MYSEKVMDHFANPRNSGEMENPDGVGTVGNPTCGDLMTIYIKVKDDVITDISFQTFGCGAAIATSSMITEIAIGKTLEEA
LKISRNDVAEELDGLPPVKMHCSNLAADALKAAIDNYYEKSN

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=125, Percent_Identity=52, Blast_Score=128, Evalue=9e-31,
Organism=Homo sapiens, GI24307953, Length=123, Percent_Identity=52.0325203252033, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788878, Length=123, Percent_Identity=56.9105691056911, Blast_Score=139, Evalue=7e-35,
Organism=Caenorhabditis elegans, GI17543474, Length=124, Percent_Identity=50.8064516129032, Blast_Score=126, Evalue=3e-30,
Organism=Saccharomyces cerevisiae, GI6325122, Length=127, Percent_Identity=51.9685039370079, Blast_Score=130, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6324800, Length=127, Percent_Identity=50.3937007874016, Blast_Score=130, Evalue=7e-32,
Organism=Drosophila melanogaster, GI21355597, Length=126, Percent_Identity=50, Blast_Score=127, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 13150; Mature: 13150

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSEKVMDHFANPRNSGEMENPDGVGTVGNPTCGDLMTIYIKVKDDVITDISFQTFGCGA
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCH
AIATSSMITEIAIGKTLEEALKISRNDVAEELDGLPPVKMHCSNLAADALKAAIDNYYEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
SN
CC
>Mature Secondary Structure
MYSEKVMDHFANPRNSGEMENPDGVGTVGNPTCGDLMTIYIKVKDDVITDISFQTFGCGA
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCH
AIATSSMITEIAIGKTLEEALKISRNDVAEELDGLPPVKMHCSNLAADALKAAIDNYYEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
SN
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]