Click here to switch to the map view.

The map label for this gene is rps6e

Identifier: 148642261

GI number: 148642261

Start: 192921

End: 193307

Strand: Reverse

Name: rps6e

Synonym: Msm_0201

Alternate gene names: 148642261

Gene position: 193307-192921 (Counterclockwise)

Preceding gene: 148642262

Following gene: 148642260

Centisome position: 10.43

GC content: 35.92

Gene sequence:

>387_bases
ATGGCATTCAAAGTAGTTGTATCTCAAAAAGAGGTAACTCATCAAATTGAAGTTGAAGATGGCAAAGCTCTTAACGGTTT
AGTTATTGGAGATGAATTTGATGGTGGAATCGTTGGTTTAGACGGTTACACTTTAAAAGTAACTGGTGGTGCTGATAAAA
ATGGATTTACCATGAAAAAAGATGTACCAGGTACTAGAAGAATCAAAAGTTTATTAAGTGGTGGTATTGGTTATCATCCT
AAATCTGACGGTGTAAAAAGGAGAAAAACCGTAAGAGGAAATACCATTGCTGATGATATCGTACAAGTTAACACTGTTGT
TGTTTCAGCTGGAAGTAAAGCTATAGCTGATATTCTTGGTGTTGGCGATGAAGAGGAAGAAGAATAG

Upstream 100 bases:

>100_bases
TTTTGGAAATTAAACGTAAGCAGGATTCTGATTGGGGAAGTTTTGGTCTTTTTGAATAATAATTAATATTTTTTATAAAA
CAATTTAAAGGAGGAATACC

Downstream 100 bases:

>100_bases
TTTTACTATTTTTCTTATTTTAACTTTTAAGTTAAATTTAAAATTATAATAAAAAGGTGGTTATCTGTGAACATACAGTC
AGATGTAAACATAGGTTTAG

Product: 30S ribosomal protein S6e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MAFKVVVSQKEVTHQIEVEDGKALNGLVIGDEFDGGIVGLDGYTLKVTGGADKNGFTMKKDVPGTRRIKSLLSGGIGYHP
KSDGVKRRKTVRGNTIADDIVQVNTVVVSAGSKAIADILGVGDEEEEE

Sequences:

>Translated_128_residues
MAFKVVVSQKEVTHQIEVEDGKALNGLVIGDEFDGGIVGLDGYTLKVTGGADKNGFTMKKDVPGTRRIKSLLSGGIGYHP
KSDGVKRRKTVRGNTIADDIVQVNTVVVSAGSKAIADILGVGDEEEEE
>Mature_127_residues
AFKVVVSQKEVTHQIEVEDGKALNGLVIGDEFDGGIVGLDGYTLKVTGGADKNGFTMKKDVPGTRRIKSLLSGGIGYHPK
SDGVKRRKTVRGNTIADDIVQVNTVVVSAGSKAIADILGVGDEEEEE

Specific function: Unknown

COG id: COG2125

COG function: function code J; Ribosomal protein S6E (S10)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6e family

Homologues:

Organism=Saccharomyces cerevisiae, GI6325167, Length=90, Percent_Identity=41.1111111111111, Blast_Score=67, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6319658, Length=90, Percent_Identity=41.1111111111111, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS6E_METS3 (A5UJM8)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001272774.1
- STRING:   A5UJM8
- GeneID:   5215789
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_0201
- eggNOG:   arNOG11366
- HOGENOM:   HBG497422
- OMA:   TIADDIS
- ProtClustDB:   PRK04290
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00512
- InterPro:   IPR001377
- InterPro:   IPR020924
- PANTHER:   PTHR11502
- PANTHER:   PTHR11502:SF2

Pfam domain/function: PF01092 Ribosomal_S6e

EC number: NA

Molecular weight: Translated: 13513; Mature: 13382

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS00578 RIBOSOMAL_S6E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKVVVSQKEVTHQIEVEDGKALNGLVIGDEFDGGIVGLDGYTLKVTGGADKNGFTMKK
CEEEEEECCCCCEEEEEECCCCEECEEEECCCCCCCEEECCCEEEEEECCCCCCCEEEEC
DVPGTRRIKSLLSGGIGYHPKSDGVKRRKTVRGNTIADDIVQVNTVVVSAGSKAIADILG
CCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHEEEEEEEEECCCHHHHHHHC
VGDEEEEE
CCCCCCCC
>Mature Secondary Structure 
AFKVVVSQKEVTHQIEVEDGKALNGLVIGDEFDGGIVGLDGYTLKVTGGADKNGFTMKK
EEEEEECCCCCEEEEEECCCCEECEEEECCCCCCCEEECCCEEEEEECCCCCCCEEEEC
DVPGTRRIKSLLSGGIGYHPKSDGVKRRKTVRGNTIADDIVQVNTVVVSAGSKAIADILG
CCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHEEEEEEEEECCCHHHHHHHC
VGDEEEEE
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA