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The map label for this gene is 148642223

Identifier: 148642223

GI number: 148642223

Start: 155732

End: 155995

Strand: Reverse

Name: 148642223

Synonym: Msm_0163

Alternate gene names: NA

Gene position: 155995-155732 (Counterclockwise)

Preceding gene: 148642224

Following gene: 148642222

Centisome position: 8.42

GC content: 29.17

Gene sequence:

>264_bases
ATGTATGTAATTATAGTTTATGATATTAAGGTTGAGCGGGTCAATAAAGTAAAGTCATTTTTAAGGCAGTACCTCTTTTG
GATTCAAAATTCTGTTTTTGAAGGAGAAGCTAGTGAAAGCGAGTTTAAGATAATTCATGATGGTTTAATGAAAATAATTG
ATACAGAGGTTGATTCAGTTATAATTTATAAATTAAGAATGGCTGATGTGATGAATCGTGAGGTTTTAGGTATTGAAAAA
GCACCTATCGATGAAATTTTATAA

Upstream 100 bases:

>100_bases
GTTTCTTACCAAAGATTAATCCGATTAGAAGCATATAAACTTAAAAAACATATTTTAGGCATTGAAAAATATGATCCATT
CGTAAGCTGGTGGTGACTTT

Downstream 100 bases:

>100_bases
ATTTGATATTTTTAATTTTATTTAAACTGTTAAATTTGATAAAATAAATTTTAAAAGCTTTGTTTATCACATGTTTTATT
TTTTGATTATTTTTTAGCTA

Product: putative DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MYVIIVYDIKVERVNKVKSFLRQYLFWIQNSVFEGEASESEFKIIHDGLMKIIDTEVDSVIIYKLRMADVMNREVLGIEK
APIDEIL

Sequences:

>Translated_87_residues
MYVIIVYDIKVERVNKVKSFLRQYLFWIQNSVFEGEASESEFKIIHDGLMKIIDTEVDSVIIYKLRMADVMNREVLGIEK
APIDEIL
>Mature_87_residues
MYVIIVYDIKVERVNKVKSFLRQYLFWIQNSVFEGEASESEFKIIHDGLMKIIDTEVDSVIIYKLRMADVMNREVLGIEK
APIDEIL

Specific function: Unknown

COG id: COG1343

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021127
- InterPro:   IPR000640
- InterPro:   IPR019199 [H]

Pfam domain/function: PF09827 CRISPR_Cas2 [H]

EC number: NA

Molecular weight: Translated: 10240; Mature: 10240

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVIIVYDIKVERVNKVKSFLRQYLFWIQNSVFEGEASESEFKIIHDGLMKIIDTEVDSV
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHH
IIYKLRMADVMNREVLGIEKAPIDEIL
HHHHHHHHHHHCCHHCCCCCCCHHHCC
>Mature Secondary Structure
MYVIIVYDIKVERVNKVKSFLRQYLFWIQNSVFEGEASESEFKIIHDGLMKIIDTEVDSV
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHH
IIYKLRMADVMNREVLGIEKAPIDEIL
HHHHHHHHHHHCCHHCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]