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The map label for this gene is jag [H]

Identifier: 148381581

GI number: 148381581

Start: 3884308

End: 3884946

Strand: Reverse

Name: jag [H]

Synonym: CBO3644

Alternate gene names: 148381581

Gene position: 3884946-3884308 (Counterclockwise)

Preceding gene: 148381582

Following gene: 148381580

Centisome position: 99.95

GC content: 28.64

Gene sequence:

>639_bases
GTGACTTGGGGAATGAAAGTTATTGAAATGACTGGGAAGACCATAGAAGAAGCCATTAATCACGGATTAAAGGAGTTAAA
TACTTCAAAAGATAAGGTAGAAATAAAAGTTATTGATGAAGGAAGCAAGGGATTTCTTAATTTTATAGGTACAAGACCTG
CAAAAATAGAAATGAAGTTAAAAAAAGATTATGAAAAAGAAGTTAGAGATTTTTTAGAATCTATATTAAAAAGTATGGAT
GTAGAAGCTAAAATAAGTATAAAGGAAAAGAAAGATGTAATAAAAATAGATTTATCAGGGTCAGACATGGGCATAATCAT
AGGATATAGAGGCGAAACTTTAGATTCTCTACAATATTTAGTTAGTCTTGTAATTAATAAAGATCAAAGTTGTGATTACA
AAAGAGTTATACTAGATACAGAAAACTATAGAGATAAAAGGGAAGAAACATTAAAAAAATTAGCAAGAAGATTAGGCCAT
AAGGTAAGAGAAACTGGAAGACCAGTTAAATTAGAACCTATGAATCCTTATGAAAGAAGAATAATACATTCAGAACTTCA
AAATAATAACTATGTTGAAACCTATAGTGAAGGTGAAGAGCCTTTTAGAAAAGTTGTAATAAATTTAAGGAAAGCCTAA

Upstream 100 bases:

>100_bases
CTTTAGTATTATACTGGGTTATAAATAATTTAATTCAAATAATACAAACAGTTATAATGAAAAAAATGGAGTTAAGAGGT
AAAGTTGAAGCCTAGGGGGT

Downstream 100 bases:

>100_bases
AGGCTTTCTTTTTATATTATTTGTAATTTGTAAAAAGAGGTGATTTTATGAAAGAATTTGATACTATAGCTGCTGTAGCA
ACACCAGTAGGAGAAGGTGG

Product: DNA/RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MTWGMKVIEMTGKTIEEAINHGLKELNTSKDKVEIKVIDEGSKGFLNFIGTRPAKIEMKLKKDYEKEVRDFLESILKSMD
VEAKISIKEKKDVIKIDLSGSDMGIIIGYRGETLDSLQYLVSLVINKDQSCDYKRVILDTENYRDKREETLKKLARRLGH
KVRETGRPVKLEPMNPYERRIIHSELQNNNYVETYSEGEEPFRKVVINLRKA

Sequences:

>Translated_212_residues
MTWGMKVIEMTGKTIEEAINHGLKELNTSKDKVEIKVIDEGSKGFLNFIGTRPAKIEMKLKKDYEKEVRDFLESILKSMD
VEAKISIKEKKDVIKIDLSGSDMGIIIGYRGETLDSLQYLVSLVINKDQSCDYKRVILDTENYRDKREETLKKLARRLGH
KVRETGRPVKLEPMNPYERRIIHSELQNNNYVETYSEGEEPFRKVVINLRKA
>Mature_211_residues
TWGMKVIEMTGKTIEEAINHGLKELNTSKDKVEIKVIDEGSKGFLNFIGTRPAKIEMKLKKDYEKEVRDFLESILKSMDV
EAKISIKEKKDVIKIDLSGSDMGIIIGYRGETLDSLQYLVSLVINKDQSCDYKRVILDTENYRDKREETLKKLARRLGHK
VRETGRPVKLEPMNPYERRIIHSELQNNNYVETYSEGEEPFRKVVINLRKA

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 24626; Mature: 24495

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWGMKVIEMTGKTIEEAINHGLKELNTSKDKVEIKVIDEGSKGFLNFIGTRPAKIEMKL
CCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHCCCCCEEEEHH
KKDYEKEVRDFLESILKSMDVEAKISIKEKKDVIKIDLSGSDMGIIIGYRGETLDSLQYL
HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCHHHHHHH
VSLVINKDQSCDYKRVILDTENYRDKREETLKKLARRLGHKVRETGRPVKLEPMNPYERR
HHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHH
IIHSELQNNNYVETYSEGEEPFRKVVINLRKA
HHHHHHCCCCCEECCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
TWGMKVIEMTGKTIEEAINHGLKELNTSKDKVEIKVIDEGSKGFLNFIGTRPAKIEMKL
CCCHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHCCCCCEEEEHH
KKDYEKEVRDFLESILKSMDVEAKISIKEKKDVIKIDLSGSDMGIIIGYRGETLDSLQYL
HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCHHHHHHH
VSLVINKDQSCDYKRVILDTENYRDKREETLKKLARRLGHKVRETGRPVKLEPMNPYERR
HHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHH
IIHSELQNNNYVETYSEGEEPFRKVVINLRKA
HHHHHHCCCCCEECCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]