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The map label for this gene is 148381473

Identifier: 148381473

GI number: 148381473

Start: 3776274

End: 3776513

Strand: Reverse

Name: 148381473

Synonym: CBO3533

Alternate gene names: NA

Gene position: 3776513-3776274 (Counterclockwise)

Preceding gene: 148381474

Following gene: 148381472

Centisome position: 97.16

GC content: 25.83

Gene sequence:

>240_bases
TTGCGCTTAGATAAATTTCTTAAAGTTTCAAGAATAATAAAAAGAAGAACTGTAGCTAAAGAGGCTTGTGAAAATGAAAG
AGTTTTTGTTAATTCTAAAATAGCTAAACCAGGTACTGAAGTTAAAGAGGGAGATATCTTAGAAATACAATATGCTAATA
AAACTATGAAGTATGAAATAATATCTGTTTTAGAGCATGTAAAAAAAGAAGATGCTGAAAATATGTACAAAATTATATAA

Upstream 100 bases:

>100_bases
CTAAAAGAAAAAGTAAACAAAAAATAAATAATAAATATAAAAAACCTAGGTTTTAATCTGGGTTTTTTGTTTATTTATAT
AAAGTTAAGGGGGAAAGGAT

Downstream 100 bases:

>100_bases
GTTTCAAAATAAAAGGTTCTAAAAAAATTTTTACAATACGATTTTTTAGAACCTTTTATTTTATAGTAATATACAATAAT
GAATAAGCATATATTATTTA

Product: S4 domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 79

Protein sequence:

>79_residues
MRLDKFLKVSRIIKRRTVAKEACENERVFVNSKIAKPGTEVKEGDILEIQYANKTMKYEIISVLEHVKKEDAENMYKII

Sequences:

>Translated_79_residues
MRLDKFLKVSRIIKRRTVAKEACENERVFVNSKIAKPGTEVKEGDILEIQYANKTMKYEIISVLEHVKKEDAENMYKII
>Mature_79_residues
MRLDKFLKVSRIIKRRTVAKEACENERVFVNSKIAKPGTEVKEGDILEIQYANKTMKYEIISVLEHVKKEDAENMYKII

Specific function: Unknown

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 9272; Mature: 9272

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDKFLKVSRIIKRRTVAKEACENERVFVNSKIAKPGTEVKEGDILEIQYANKTMKYEI
CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCHHHHH
ISVLEHVKKEDAENMYKII
HHHHHHHHHHCHHHHHHCC
>Mature Secondary Structure
MRLDKFLKVSRIIKRRTVAKEACENERVFVNSKIAKPGTEVKEGDILEIQYANKTMKYEI
CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCHHHHH
ISVLEHVKKEDAENMYKII
HHHHHHHHHHCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]