| Definition | Clostridium botulinum A str. ATCC 3502, complete genome. |
|---|---|
| Accession | NC_009495 |
| Length | 3,886,916 |
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The map label for this gene is pflA [H]
Identifier: 148381164
GI number: 148381164
Start: 3424102
End: 3426330
Strand: Reverse
Name: pflA [H]
Synonym: CBO3216
Alternate gene names: 148381164
Gene position: 3426330-3424102 (Counterclockwise)
Preceding gene: 148381165
Following gene: 148381163
Centisome position: 88.15
GC content: 29.92
Gene sequence:
>2229_bases ATGTTTTATGATTCATGGAAAAAATTTAATGAAGGTTCATGGGAAAATAATATAAATGTAAGAGAGTTTATACAAAATAA TTATACGCCTTATTATGGAGATCATAGCTTTTTAAAGGAATCTACTGAAAAAACGAAAGATCTTTGGAAACAATGCGAAA CATTAATAGCAGAAGAAATAAAAAAAGGAATATTAGATGTAGATTTAGATAATATTTCTGCTATAAATGCTTTTGATGCA GGATATATAGACAAGGATAATGAAACCATAGTAGGTCTTCAGACAGATAAACCACTAAAAAGAATTATAAATCCTTTTGG TGGTATAAGAATGGTAAAACAAGCTTTAGAAGCCTATGATTATAAGTTAAACCCACACATAAAGGATATATTTACCAAAT ATAGAAAAACCCATAATGATGGTGTTTTTGATGCTTATACTGAAGAGATGAGAAAAGCCAGAAGTGCAGGATTATTAACA GGGCTTCCAGATGCCTATGGAAGAGGGAGAATAATAGGTGATTATAGAAGAATACCATTATATGGGGTAGATTTTTTAAT AAAAAATAAAGAAGAAGATTTAAAAGCTGTTAAAGGGGAAATGAATGAAACTACCATAAGAAAAAGAGAAGAGATAAGCG AACAAATAAAAGCTTTAATAGCTATGAAAGAAATGGCACTAAAGTATGGAATAGACATAAGCAAGCCAGCTAAAAATGCA GAAGAAGCAGTACAATTTTTATATTTTGGTTATTTAGCAGGAGTTAAAGAAAATAATGGAGCAGCGATGTCCTTAGGAAG AGTAAGTTCATTTATAGATATATATATAGAAAGAGACTTGAAACAGGGAATACTAACAGAAGAAACAGCGCAAGAAATTA TAGATCAGTTTGTTATAAAATTAAGATTAGTAAGACATCTTAGAACACCAGAGTATAATGATCTTTTTGCAGGAGATCCT AACTGGATTACAGAAGCTATAGGGGGAATGGGATTAAATGGGGAGACTTTAGTTACTAAAACATCCTATAGATTCTTAAA TACTTTAAATAATTTAGGACCAGCACCAGAACCTAATATGACGATATTATGGTCACAAAACTTACCAGAAAACTTTAAAA AATTCTGTGCAGAAATGTCTATAAAGACAGATTCTATTCAATATGAAAATGACGATTTAATGAGAGATATATATGGAGAT GATTATGGTATAGCTTGTTGTGTATCAGCTATGGCCTTGGGAAAACAGATGCAATTTTTCGGTGCAAGATGCAATTTAGC CAAAGCTTTATTGTATTCCATAAATGGTGGAGTAGATGAAAAGAAGAATATTAAAGTAATAGACAATATAAATGCAATAG AAGATACTATGTTAGATTATGAAAAAGTTAAGGAAAATTATTTTAAAGTATTAGAATATATAGCAAATTTATATGTAAAT ACTATGAATATAATACATTATATGCATGATAAGTATGCTTATGAAGGTGGGCTTATGGCACTTCATGATACAGAAGTAGA AAGACTTATGGCCTTTGGTGTAGCTGGATTGTCTGTTGTAGCAGATTCATTAAGTGCTATAAAATATGCAAAAGTGAAAC CAGTAAGAGAAAATGGTATTGCTGTAGATTTTGAAATAGAAGGAGATTTCCCTAAATACGGTAATGATGATGATAGAGTT GATGAAATAGCAGTGGAAATAGTTAATAAATTTATTAATGAATTAAAGAAAAATAAAACTTATAGAAATGCAAAACATAC ACTTTCAGTTTTAACAATAACTTCTAATGTAGTGTATGGTAAGAAAACAGGTTCAACACCAGATGGAAGAAAATCAGGAG AAGCATTTGCTCCAGGTGCTAATCCTATGCATGGAAGAGATAAAAATGGTGCTTTAGCATCATTAAATTCTGTAGCTAAA ATACCTTACAAAAATATTTGTGAAGATGGAGTATCAAATACATTTTCTATAGTTCCAGATGCATTAGGTAAAAGTGAAGA AGAAAGAATAAATAATTTAGTATCTATATTAGATGGATATTTTGTACAAAATGCTCATCATTTAAATGTTAATGTGTTAA ACAGAGATCTACTAATAGATGCAATGGAACATCCAGAAAAATATCCATCACTTACTATAAGGGTATCAGGTTATGCAGTT CATTTTAATAGATTGACTAAAGCACAACAATTAGAAGTGATAAGCAGAACTTTCCATAAAGACATGTAA
Upstream 100 bases:
>100_bases TAGGAGTAATTGTGGTTTGCAAATTAAAGTTAGACGTGGTTTTTTAGGCAACATAAGCTCTAAATGGCTTTAAAATATAT TAAATTTTAGGAGGTTTGCT
Downstream 100 bases:
>100_bases ATTATTTCTATATTATGATTATTAGGATTAATGTTTCTAGTCTTTTTAGATGAGATATATTATAGGTTTTTATGCTGTAT ATAAGGGGTGTCATAGCCCT
Product: formate acetyltransferase 1
Products: NA
Alternate protein names: Pyruvate formate-lyase [H]
Number of amino acids: Translated: 742; Mature: 742
Protein sequence:
>742_residues MFYDSWKKFNEGSWENNINVREFIQNNYTPYYGDHSFLKESTEKTKDLWKQCETLIAEEIKKGILDVDLDNISAINAFDA GYIDKDNETIVGLQTDKPLKRIINPFGGIRMVKQALEAYDYKLNPHIKDIFTKYRKTHNDGVFDAYTEEMRKARSAGLLT GLPDAYGRGRIIGDYRRIPLYGVDFLIKNKEEDLKAVKGEMNETTIRKREEISEQIKALIAMKEMALKYGIDISKPAKNA EEAVQFLYFGYLAGVKENNGAAMSLGRVSSFIDIYIERDLKQGILTEETAQEIIDQFVIKLRLVRHLRTPEYNDLFAGDP NWITEAIGGMGLNGETLVTKTSYRFLNTLNNLGPAPEPNMTILWSQNLPENFKKFCAEMSIKTDSIQYENDDLMRDIYGD DYGIACCVSAMALGKQMQFFGARCNLAKALLYSINGGVDEKKNIKVIDNINAIEDTMLDYEKVKENYFKVLEYIANLYVN TMNIIHYMHDKYAYEGGLMALHDTEVERLMAFGVAGLSVVADSLSAIKYAKVKPVRENGIAVDFEIEGDFPKYGNDDDRV DEIAVEIVNKFINELKKNKTYRNAKHTLSVLTITSNVVYGKKTGSTPDGRKSGEAFAPGANPMHGRDKNGALASLNSVAK IPYKNICEDGVSNTFSIVPDALGKSEEERINNLVSILDGYFVQNAHHLNVNVLNRDLLIDAMEHPEKYPSLTIRVSGYAV HFNRLTKAQQLEVISRTFHKDM
Sequences:
>Translated_742_residues MFYDSWKKFNEGSWENNINVREFIQNNYTPYYGDHSFLKESTEKTKDLWKQCETLIAEEIKKGILDVDLDNISAINAFDA GYIDKDNETIVGLQTDKPLKRIINPFGGIRMVKQALEAYDYKLNPHIKDIFTKYRKTHNDGVFDAYTEEMRKARSAGLLT GLPDAYGRGRIIGDYRRIPLYGVDFLIKNKEEDLKAVKGEMNETTIRKREEISEQIKALIAMKEMALKYGIDISKPAKNA EEAVQFLYFGYLAGVKENNGAAMSLGRVSSFIDIYIERDLKQGILTEETAQEIIDQFVIKLRLVRHLRTPEYNDLFAGDP NWITEAIGGMGLNGETLVTKTSYRFLNTLNNLGPAPEPNMTILWSQNLPENFKKFCAEMSIKTDSIQYENDDLMRDIYGD DYGIACCVSAMALGKQMQFFGARCNLAKALLYSINGGVDEKKNIKVIDNINAIEDTMLDYEKVKENYFKVLEYIANLYVN TMNIIHYMHDKYAYEGGLMALHDTEVERLMAFGVAGLSVVADSLSAIKYAKVKPVRENGIAVDFEIEGDFPKYGNDDDRV DEIAVEIVNKFINELKKNKTYRNAKHTLSVLTITSNVVYGKKTGSTPDGRKSGEAFAPGANPMHGRDKNGALASLNSVAK IPYKNICEDGVSNTFSIVPDALGKSEEERINNLVSILDGYFVQNAHHLNVNVLNRDLLIDAMEHPEKYPSLTIRVSGYAV HFNRLTKAQQLEVISRTFHKDM >Mature_742_residues MFYDSWKKFNEGSWENNINVREFIQNNYTPYYGDHSFLKESTEKTKDLWKQCETLIAEEIKKGILDVDLDNISAINAFDA GYIDKDNETIVGLQTDKPLKRIINPFGGIRMVKQALEAYDYKLNPHIKDIFTKYRKTHNDGVFDAYTEEMRKARSAGLLT GLPDAYGRGRIIGDYRRIPLYGVDFLIKNKEEDLKAVKGEMNETTIRKREEISEQIKALIAMKEMALKYGIDISKPAKNA EEAVQFLYFGYLAGVKENNGAAMSLGRVSSFIDIYIERDLKQGILTEETAQEIIDQFVIKLRLVRHLRTPEYNDLFAGDP NWITEAIGGMGLNGETLVTKTSYRFLNTLNNLGPAPEPNMTILWSQNLPENFKKFCAEMSIKTDSIQYENDDLMRDIYGD DYGIACCVSAMALGKQMQFFGARCNLAKALLYSINGGVDEKKNIKVIDNINAIEDTMLDYEKVKENYFKVLEYIANLYVN TMNIIHYMHDKYAYEGGLMALHDTEVERLMAFGVAGLSVVADSLSAIKYAKVKPVRENGIAVDFEIEGDFPKYGNDDDRV DEIAVEIVNKFINELKKNKTYRNAKHTLSVLTITSNVVYGKKTGSTPDGRKSGEAFAPGANPMHGRDKNGALASLNSVAK IPYKNICEDGVSNTFSIVPDALGKSEEERINNLVSILDGYFVQNAHHLNVNVLNRDLLIDAMEHPEKYPSLTIRVSGYAV HFNRLTKAQQLEVISRTFHKDM
Specific function: Glucose metabolism (nonoxidative conversion). [C]
COG id: COG1882
COG function: function code C; Pyruvate-formate lyase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 pyruvate formate lyase domain [H]
Homologues:
Organism=Escherichia coli, GI1787131, Length=751, Percent_Identity=60.8521970705726, Blast_Score=953, Evalue=0.0, Organism=Escherichia coli, GI48994926, Length=751, Percent_Identity=59.9201065246338, Blast_Score=941, Evalue=0.0, Organism=Escherichia coli, GI1787044, Length=665, Percent_Identity=26.4661654135338, Blast_Score=172, Evalue=5e-44, Organism=Escherichia coli, GI1790388, Length=730, Percent_Identity=24.1095890410959, Blast_Score=150, Evalue=4e-37, Organism=Escherichia coli, GI1788933, Length=61, Percent_Identity=63.9344262295082, Blast_Score=86, Evalue=1e-17,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005949 - InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR004184 [H]
Pfam domain/function: PF01228 Gly_radical; PF02901 PFL [H]
EC number: =2.3.1.54 [H]
Molecular weight: Translated: 84030; Mature: 84030
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFYDSWKKFNEGSWENNINVREFIQNNYTPYYGDHSFLKESTEKTKDLWKQCETLIAEEI CCCCCHHHCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KKGILDVDLDNISAINAFDAGYIDKDNETIVGLQTDKPLKRIINPFGGIRMVKQALEAYD HHCCEECCCCCCCEECCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHC YKLNPHIKDIFTKYRKTHNDGVFDAYTEEMRKARSAGLLTGLPDAYGRGRIIGDYRRIPL CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCEECCE YGVDFLIKNKEEDLKAVKGEMNETTIRKREEISEQIKALIAMKEMALKYGIDISKPAKNA ECCHHEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH EEAVQFLYFGYLAGVKENNGAAMSLGRVSSFIDIYIERDLKQGILTEETAQEIIDQFVIK HHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH LRLVRHLRTPEYNDLFAGDPNWITEAIGGMGLNGETLVTKTSYRFLNTLNNLGPAPEPNM HHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCE TILWSQNLPENFKKFCAEMSIKTDSIQYENDDLMRDIYGDDYGIACCVSAMALGKQMQFF EEEECCCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH GARCNLAKALLYSINGGVDEKKNIKVIDNINAIEDTMLDYEKVKENYFKVLEYIANLYVN HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TMNIIHYMHDKYAYEGGLMALHDTEVERLMAFGVAGLSVVADSLSAIKYAKVKPVRENGI HHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE AVDFEIEGDFPKYGNDDDRVDEIAVEIVNKFINELKKNKTYRNAKHTLSVLTITSNVVYG EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEECCEEEC KKTGSTPDGRKSGEAFAPGANPMHGRDKNGALASLNSVAKIPYKNICEDGVSNTFSIVPD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCHHHCCH ALGKSEEERINNLVSILDGYFVQNAHHLNVNVLNRDLLIDAMEHPEKYPSLTIRVSGYAV HHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHCCCCCCCEEEEEEEEEE HFNRLTKAQQLEVISRTFHKDM EHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MFYDSWKKFNEGSWENNINVREFIQNNYTPYYGDHSFLKESTEKTKDLWKQCETLIAEEI CCCCCHHHCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KKGILDVDLDNISAINAFDAGYIDKDNETIVGLQTDKPLKRIINPFGGIRMVKQALEAYD HHCCEECCCCCCCEECCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHC YKLNPHIKDIFTKYRKTHNDGVFDAYTEEMRKARSAGLLTGLPDAYGRGRIIGDYRRIPL CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCEECCE YGVDFLIKNKEEDLKAVKGEMNETTIRKREEISEQIKALIAMKEMALKYGIDISKPAKNA ECCHHEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH EEAVQFLYFGYLAGVKENNGAAMSLGRVSSFIDIYIERDLKQGILTEETAQEIIDQFVIK HHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH LRLVRHLRTPEYNDLFAGDPNWITEAIGGMGLNGETLVTKTSYRFLNTLNNLGPAPEPNM HHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCE TILWSQNLPENFKKFCAEMSIKTDSIQYENDDLMRDIYGDDYGIACCVSAMALGKQMQFF EEEECCCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH GARCNLAKALLYSINGGVDEKKNIKVIDNINAIEDTMLDYEKVKENYFKVLEYIANLYVN HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TMNIIHYMHDKYAYEGGLMALHDTEVERLMAFGVAGLSVVADSLSAIKYAKVKPVRENGI HHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE AVDFEIEGDFPKYGNDDDRVDEIAVEIVNKFINELKKNKTYRNAKHTLSVLTITSNVVYG EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEECCEEEC KKTGSTPDGRKSGEAFAPGANPMHGRDKNGALASLNSVAKIPYKNICEDGVSNTFSIVPD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCHHHCCH ALGKSEEERINNLVSILDGYFVQNAHHLNVNVLNRDLLIDAMEHPEKYPSLTIRVSGYAV HHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHCCCCCCCEEEEEEEEEE HFNRLTKAQQLEVISRTFHKDM EHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8636053 [H]