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The map label for this gene is ydcP [H]

Identifier: 148381073

GI number: 148381073

Start: 3321434

End: 3323800

Strand: Reverse

Name: ydcP [H]

Synonym: CBO3122

Alternate gene names: 148381073

Gene position: 3323800-3321434 (Counterclockwise)

Preceding gene: 148381074

Following gene: 148381072

Centisome position: 85.51

GC content: 27.17

Gene sequence:

>2367_bases
ATGAGAAAAATAGAATTACTAGCTCCAGCTGGAAGCGTGGAAAGTTTGTATGCTGCAGTACAGGCAGGAGCAGATGCAGT
ATACATGGGGGGAAGCAAATTTTCTGCTAGAGCCTATGCTAATAATTTTGATGATGAGCAATTAAAAGAGGCTATAAACT
ATTGCCATTTATATGGTGTTAAAGTATATATTACAGTTAATACATTAATAAAAGAAGGAGAAATAAAAGAAGCTATAAAG
TATATAAGATTTTTATATTCTATAGGGGTAGATGCTTTAATAATACAGGATACTGGAATAGCGAAATTAATAAAAGAAAA
CTTACCAGATTTTGAAATTCATGCATCTACCCAAATGACTGTACATAATGGAGAAGGCGCTATATTTTTAAAAGAATTAG
GTTTTAAAAGAATAGTTTTATCACGAGAACTTTCATTAAAAGAAATAGAATATATCTCAAAGGACTTAGATATAGAAACG
GAAATATTTGTACATGGAGCTCTTTGTATTTGTTATTCAGGACAATGTTTAATGAGTAGTATATTAGGTGGAAGAAGTGG
AAATAGAGGGAGATGTGCTCAACCTTGTAGGCTTCCATATACATTGATAAATGAAAAGAATGATAAGGAAACAAAGGGGT
ATCTATTAAGCCCTAAGGATATATGTAATATAGAAAACATGGAAGATTTAATAAAGGCTGGTGCTACATCCTTTAAGATA
GAAGGAAGAATGAAAAGACCAGAATATGTAGCAGGCGTAATTAGAAGTTATAGAAAAGCTATAGATGCAGCTATAAATAA
AGAAAATTTTGAAGAAGAACAAAATAAAAAAGAGTTAATGCAATTATTTAATAGAGAGGGCTTTTCAAAGGCATACCTTT
ATGGAAACAAGGGTAAAGATATGATGGCATATTCTTTTCCCAAAAATACAGGATTACTTCTAGGAGAGGTAAATAAGGAT
AAAAGTATAAAATTAGAAGAGAATTTAAAAATAAAAGATGGTATAAGAAATGCTGATAAAGGTTTTATAGTGTCTAGTAT
AATTAAGGATAATAAAGAAGTAGAAAAAGCCTACAAAGGAGATTTAGTAAAAATAAAACCTTCAAATTATAAGTTTAAGG
ATAAATTATATAAAACCTCAGATACGGAACTTTTACAGTCCTTAGGTAAAATATATGAGGATAAATTTAATAAGAAAATT
TATTTAGAAGCTAATGTAGAGTTTAAAGTAGGCGAAAAAATAAAATTAAGTTGCAGATACAATGGAGAAGAATATTTTGC
AGAAGGGAAAGAAATAGAAAAGGCACTAAAAAAACCTTTATCCATGGAAAAAATAGAAGAAAATTTAATGAAAAGTGGGG
AAACTCCTTTCAAGATAAATAAAATTAAATTTGACTCTTATGAAGAAGGATTTTTACCTGTTTCAGAGATAAATAATTGC
CGTAGAATACTTATAAATTCCATAGAAGAAAAAATAATACAAAATAATCCACATTGTGGAAAAATAAAAAGGGTTAATGT
GGATAATATATACAGTAACATAAATGGAATAAAAGAAAATGATTTACCAAAGTATATATTTTCAATATATACCTATGAAC
AGTTAAAAGCTGTAGCGGATAATGGCTTTAAAAATATAATAGTAGATTTATTTACAAGGAATCCATTAAACTTACATAAA
ATAAAAGGATTATATCAGGATTTAAATATATATTTAAAAGCTCCTAATATTATAAAGAGTGAATTTGATTATGTAGAAAA
GATAATAGAAGAGAATCTATATAACATAAAAGGTATAGTAACGGCTAATCTAGGTATAGTAAATAAGTTTAATAATAGAA
CAAAGATAATAGGAGACTATAAATTAAATATATTTAATAGTTTCGCAGGGGATTTTTATAAGGACTTTATTAAAGGAAGT
TGTTTAAGTATAGAGCTTAATAAAAAAGAAGTAAAATCTATAACTAAACATATGAATTTAGACAGTCAAATGCTTATATA
TGGTAAAATAGAAAATATGGTCAGTGAATACTGTCCTATAGGCAGTACATTTGGAGGTAAAAATAGTTATTCTACTTGTA
ATAAAGCTTGTGAAAAAGGAATTTATACATTAAAGGATAGGATGAGTGCTAAATTCCCAGTTAAAACAGATATATTCTGT
AGAAGTCATATATACAATAATTCAGATATTAATTTAATAGGAAATATAGAGGAACTAAGGACATTTGGAATTAATAGTTT
TAGATTAGATTTTCTAGAGGAGAATTATGAAGAAATTGAATATATATTAAAATCTCTTAAAGAAGAAAATTGGAAGAGAG
ATTTTAAAAATTATACAAGAGGTCATTATAAAAGAGGGGTAGAATAA

Upstream 100 bases:

>100_bases
AATTACCTAATTTACACAGATAAATAATAATGAATACAACATTTCAAATATGTTTAATCTATTGTATAATAAACTTTAGA
ATATTTTAGGAGAGATGAAC

Downstream 100 bases:

>100_bases
CTTAATAGAATATTTATACAATAAATCAGATATGGGTATATAACAGTTATAATTAAGCTGAGAATAGATAGGATTAAAAA
ATAATAGAAAAAGTAACAGA

Product: peptidase, U32 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 788; Mature: 788

Protein sequence:

>788_residues
MRKIELLAPAGSVESLYAAVQAGADAVYMGGSKFSARAYANNFDDEQLKEAINYCHLYGVKVYITVNTLIKEGEIKEAIK
YIRFLYSIGVDALIIQDTGIAKLIKENLPDFEIHASTQMTVHNGEGAIFLKELGFKRIVLSRELSLKEIEYISKDLDIET
EIFVHGALCICYSGQCLMSSILGGRSGNRGRCAQPCRLPYTLINEKNDKETKGYLLSPKDICNIENMEDLIKAGATSFKI
EGRMKRPEYVAGVIRSYRKAIDAAINKENFEEEQNKKELMQLFNREGFSKAYLYGNKGKDMMAYSFPKNTGLLLGEVNKD
KSIKLEENLKIKDGIRNADKGFIVSSIIKDNKEVEKAYKGDLVKIKPSNYKFKDKLYKTSDTELLQSLGKIYEDKFNKKI
YLEANVEFKVGEKIKLSCRYNGEEYFAEGKEIEKALKKPLSMEKIEENLMKSGETPFKINKIKFDSYEEGFLPVSEINNC
RRILINSIEEKIIQNNPHCGKIKRVNVDNIYSNINGIKENDLPKYIFSIYTYEQLKAVADNGFKNIIVDLFTRNPLNLHK
IKGLYQDLNIYLKAPNIIKSEFDYVEKIIEENLYNIKGIVTANLGIVNKFNNRTKIIGDYKLNIFNSFAGDFYKDFIKGS
CLSIELNKKEVKSITKHMNLDSQMLIYGKIENMVSEYCPIGSTFGGKNSYSTCNKACEKGIYTLKDRMSAKFPVKTDIFC
RSHIYNNSDINLIGNIEELRTFGINSFRLDFLEENYEEIEYILKSLKEENWKRDFKNYTRGHYKRGVE

Sequences:

>Translated_788_residues
MRKIELLAPAGSVESLYAAVQAGADAVYMGGSKFSARAYANNFDDEQLKEAINYCHLYGVKVYITVNTLIKEGEIKEAIK
YIRFLYSIGVDALIIQDTGIAKLIKENLPDFEIHASTQMTVHNGEGAIFLKELGFKRIVLSRELSLKEIEYISKDLDIET
EIFVHGALCICYSGQCLMSSILGGRSGNRGRCAQPCRLPYTLINEKNDKETKGYLLSPKDICNIENMEDLIKAGATSFKI
EGRMKRPEYVAGVIRSYRKAIDAAINKENFEEEQNKKELMQLFNREGFSKAYLYGNKGKDMMAYSFPKNTGLLLGEVNKD
KSIKLEENLKIKDGIRNADKGFIVSSIIKDNKEVEKAYKGDLVKIKPSNYKFKDKLYKTSDTELLQSLGKIYEDKFNKKI
YLEANVEFKVGEKIKLSCRYNGEEYFAEGKEIEKALKKPLSMEKIEENLMKSGETPFKINKIKFDSYEEGFLPVSEINNC
RRILINSIEEKIIQNNPHCGKIKRVNVDNIYSNINGIKENDLPKYIFSIYTYEQLKAVADNGFKNIIVDLFTRNPLNLHK
IKGLYQDLNIYLKAPNIIKSEFDYVEKIIEENLYNIKGIVTANLGIVNKFNNRTKIIGDYKLNIFNSFAGDFYKDFIKGS
CLSIELNKKEVKSITKHMNLDSQMLIYGKIENMVSEYCPIGSTFGGKNSYSTCNKACEKGIYTLKDRMSAKFPVKTDIFC
RSHIYNNSDINLIGNIEELRTFGINSFRLDFLEENYEEIEYILKSLKEENWKRDFKNYTRGHYKRGVE
>Mature_788_residues
MRKIELLAPAGSVESLYAAVQAGADAVYMGGSKFSARAYANNFDDEQLKEAINYCHLYGVKVYITVNTLIKEGEIKEAIK
YIRFLYSIGVDALIIQDTGIAKLIKENLPDFEIHASTQMTVHNGEGAIFLKELGFKRIVLSRELSLKEIEYISKDLDIET
EIFVHGALCICYSGQCLMSSILGGRSGNRGRCAQPCRLPYTLINEKNDKETKGYLLSPKDICNIENMEDLIKAGATSFKI
EGRMKRPEYVAGVIRSYRKAIDAAINKENFEEEQNKKELMQLFNREGFSKAYLYGNKGKDMMAYSFPKNTGLLLGEVNKD
KSIKLEENLKIKDGIRNADKGFIVSSIIKDNKEVEKAYKGDLVKIKPSNYKFKDKLYKTSDTELLQSLGKIYEDKFNKKI
YLEANVEFKVGEKIKLSCRYNGEEYFAEGKEIEKALKKPLSMEKIEENLMKSGETPFKINKIKFDSYEEGFLPVSEINNC
RRILINSIEEKIIQNNPHCGKIKRVNVDNIYSNINGIKENDLPKYIFSIYTYEQLKAVADNGFKNIIVDLFTRNPLNLHK
IKGLYQDLNIYLKAPNIIKSEFDYVEKIIEENLYNIKGIVTANLGIVNKFNNRTKIIGDYKLNIFNSFAGDFYKDFIKGS
CLSIELNKKEVKSITKHMNLDSQMLIYGKIENMVSEYCPIGSTFGGKNSYSTCNKACEKGIYTLKDRMSAKFPVKTDIFC
RSHIYNNSDINLIGNIEELRTFGINSFRLDFLEENYEEIEYILKSLKEENWKRDFKNYTRGHYKRGVE

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=512, Percent_Identity=34.375, Blast_Score=247, Evalue=2e-66,
Organism=Escherichia coli, GI1788397, Length=354, Percent_Identity=33.3333333333333, Blast_Score=178, Evalue=2e-45,
Organism=Escherichia coli, GI1789548, Length=312, Percent_Identity=30.7692307692308, Blast_Score=147, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 90349; Mature: 90349

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKIELLAPAGSVESLYAAVQAGADAVYMGGSKFSARAYANNFDDEQLKEAINYCHLYGV
CCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHEEE
KVYITVNTLIKEGEIKEAIKYIRFLYSIGVDALIIQDTGIAKLIKENLPDFEIHASTQMT
EEEEEEEHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCEEEECCEEEE
VHNGEGAIFLKELGFKRIVLSRELSLKEIEYISKDLDIETEIFVHGALCICYSGQCLMSS
EECCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEEEEEEEECCHHHHHH
ILGGRSGNRGRCAQPCRLPYTLINEKNDKETKGYLLSPKDICNIENMEDLIKAGATSFKI
HHCCCCCCCCCCCCCCCCCHHEECCCCCCCCCCEEECCHHHCCCCCHHHHHHCCCCEEEE
EGRMKRPEYVAGVIRSYRKAIDAAINKENFEEEQNKKELMQLFNREGFSKAYLYGNKGKD
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
MMAYSFPKNTGLLLGEVNKDKSIKLEENLKIKDGIRNADKGFIVSSIIKDNKEVEKAYKG
CEEEECCCCCCEEEEECCCCCCEEECCCCCHHCCCCCCCCCHHHHHHHHCCHHHHHHHCC
DLVKIKPSNYKFKDKLYKTSDTELLQSLGKIYEDKFNKKIYLEANVEFKVGEKIKLSCRY
CEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCEEEEEEEE
NGEEYFAEGKEIEKALKKPLSMEKIEENLMKSGETPFKINKIKFDSYEEGFLPVSEINNC
CCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHH
RRILINSIEEKIIQNNPHCGKIKRVNVDNIYSNINGIKENDLPKYIFSIYTYEQLKAVAD
HHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
NGFKNIIVDLFTRNPLNLHKIKGLYQDLNIYLKAPNIIKSEFDYVEKIIEENLYNIKGIV
CCHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHCCHHCEEEEE
TANLGIVNKFNNRTKIIGDYKLNIFNSFAGDFYKDFIKGSCLSIELNKKEVKSITKHMNL
EECCEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCC
DSQMLIYGKIENMVSEYCPIGSTFGGKNSYSTCNKACEKGIYTLKDRMSAKFPVKTDIFC
CCCEEEEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCEE
RSHIYNNSDINLIGNIEELRTFGINSFRLDFLEENYEEIEYILKSLKEENWKRDFKNYTR
HHHCCCCCCCEEEECHHHHHHHCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
GHYKRGVE
HHHHCCCC
>Mature Secondary Structure
MRKIELLAPAGSVESLYAAVQAGADAVYMGGSKFSARAYANNFDDEQLKEAINYCHLYGV
CCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHEEE
KVYITVNTLIKEGEIKEAIKYIRFLYSIGVDALIIQDTGIAKLIKENLPDFEIHASTQMT
EEEEEEEHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCEEEECCEEEE
VHNGEGAIFLKELGFKRIVLSRELSLKEIEYISKDLDIETEIFVHGALCICYSGQCLMSS
EECCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEEEEEEEECCHHHHHH
ILGGRSGNRGRCAQPCRLPYTLINEKNDKETKGYLLSPKDICNIENMEDLIKAGATSFKI
HHCCCCCCCCCCCCCCCCCHHEECCCCCCCCCCEEECCHHHCCCCCHHHHHHCCCCEEEE
EGRMKRPEYVAGVIRSYRKAIDAAINKENFEEEQNKKELMQLFNREGFSKAYLYGNKGKD
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
MMAYSFPKNTGLLLGEVNKDKSIKLEENLKIKDGIRNADKGFIVSSIIKDNKEVEKAYKG
CEEEECCCCCCEEEEECCCCCCEEECCCCCHHCCCCCCCCCHHHHHHHHCCHHHHHHHCC
DLVKIKPSNYKFKDKLYKTSDTELLQSLGKIYEDKFNKKIYLEANVEFKVGEKIKLSCRY
CEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCEEEEEEEE
NGEEYFAEGKEIEKALKKPLSMEKIEENLMKSGETPFKINKIKFDSYEEGFLPVSEINNC
CCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHH
RRILINSIEEKIIQNNPHCGKIKRVNVDNIYSNINGIKENDLPKYIFSIYTYEQLKAVAD
HHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
NGFKNIIVDLFTRNPLNLHKIKGLYQDLNIYLKAPNIIKSEFDYVEKIIEENLYNIKGIV
CCHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHCCHHCEEEEE
TANLGIVNKFNNRTKIIGDYKLNIFNSFAGDFYKDFIKGSCLSIELNKKEVKSITKHMNL
EECCEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCC
DSQMLIYGKIENMVSEYCPIGSTFGGKNSYSTCNKACEKGIYTLKDRMSAKFPVKTDIFC
CCCEEEEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCEE
RSHIYNNSDINLIGNIEELRTFGINSFRLDFLEENYEEIEYILKSLKEENWKRDFKNYTR
HHHCCCCCCCEEEECHHHHHHHCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
GHYKRGVE
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]