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The map label for this gene is radC [C]

Identifier: 148380954

GI number: 148380954

Start: 3197460

End: 3198146

Strand: Reverse

Name: radC [C]

Synonym: CBO3003

Alternate gene names: 148380954

Gene position: 3198146-3197460 (Counterclockwise)

Preceding gene: 148380955

Following gene: 148380953

Centisome position: 82.28

GC content: 25.91

Gene sequence:

>687_bases
ATGGACAATAACTTTAAAATAAAGGATTTACCTAAAAATGAAAGACCACAGGAAAGACTTATAAGATATGGAGCAGAAGT
TCTTTCAAATTCAGAACTTTTAGCTGTTATTTTAAGGACTGGTACTAAAAATCAAAATATAATGATGCTTGCAAGTAGTT
TAATTAAAGAAACTGGTGGCTTGGATCAACTTTTTAATCAATCTATAGAAGAGTTAACTAAAATTAAAGGAATAGGTGTA
ACAAAAGCAGTTCAAATATTAGCATTATCAGAGCTTTCTAAGAGGTTTAAAACTTATAAATCTGGCAATGAATATAAGAT
AAGTACACCTTTAGATGTATCTAATTTAGTTATGGAAGATATGAAGTATTTAAAACAAGAAAAATTAAAAATATTAATTT
TAAATACTAAAAATATAGTTACATATATAAGAGATGTTTTTATAGGAACTCTTAATTCATCTATAGTACATCCAAGAGAA
ATATTCTGTGAAGCTATAAAGAAAAATGGTGCATCCATAATTATATGTCATAATCATCCATCAGGGGATCCAACCCCTAG
CAAAGAAGATATAAATATAACTTTGAGATTAAAAGAATGTGGTAAATTAATAGGAATAGATTTATTAGATCATATAATAA
TTGGTGAAAATAAGTATGTAAGTATGAAAGAAAAAGGTACAATATAA

Upstream 100 bases:

>100_bases
ACATCAATGGATGCTATTATAATGTTGTAGGGTTACCTTTAAATAAATTAAATTCTATGTTAATGGAGATGGGGGTAAAT
CTTTAAAAGGAGTTGTATAA

Downstream 100 bases:

>100_bases
CTAAGGAATAGAGAGGAGTAAAACTTTTATGAGATTGTTTGGTATAACTAAAGATATGGGAATAGATTTAGGTACAGCAA
ATACATTAGTATATATTAAA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MDNNFKIKDLPKNERPQERLIRYGAEVLSNSELLAVILRTGTKNQNIMMLASSLIKETGGLDQLFNQSIEELTKIKGIGV
TKAVQILALSELSKRFKTYKSGNEYKISTPLDVSNLVMEDMKYLKQEKLKILILNTKNIVTYIRDVFIGTLNSSIVHPRE
IFCEAIKKNGASIIICHNHPSGDPTPSKEDINITLRLKECGKLIGIDLLDHIIIGENKYVSMKEKGTI

Sequences:

>Translated_228_residues
MDNNFKIKDLPKNERPQERLIRYGAEVLSNSELLAVILRTGTKNQNIMMLASSLIKETGGLDQLFNQSIEELTKIKGIGV
TKAVQILALSELSKRFKTYKSGNEYKISTPLDVSNLVMEDMKYLKQEKLKILILNTKNIVTYIRDVFIGTLNSSIVHPRE
IFCEAIKKNGASIIICHNHPSGDPTPSKEDINITLRLKECGKLIGIDLLDHIIIGENKYVSMKEKGTI
>Mature_228_residues
MDNNFKIKDLPKNERPQERLIRYGAEVLSNSELLAVILRTGTKNQNIMMLASSLIKETGGLDQLFNQSIEELTKIKGIGV
TKAVQILALSELSKRFKTYKSGNEYKISTPLDVSNLVMEDMKYLKQEKLKILILNTKNIVTYIRDVFIGTLNSSIVHPRE
IFCEAIKKNGASIIICHNHPSGDPTPSKEDINITLRLKECGKLIGIDLLDHIIIGENKYVSMKEKGTI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=35.6807511737089, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1788312, Length=107, Percent_Identity=41.1214953271028, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788997, Length=106, Percent_Identity=40.5660377358491, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI2367100, Length=106, Percent_Identity=38.6792452830189, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25671; Mature: 25671

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNNFKIKDLPKNERPQERLIRYGAEVLSNSELLAVILRTGTKNQNIMMLASSLIKETGG
CCCCCEECCCCCCCCHHHHHHHHHHHHHCCCHHEEEEEECCCCCCCHHHHHHHHHHHCCC
LDQLFNQSIEELTKIKGIGVTKAVQILALSELSKRFKTYKSGNEYKISTPLDVSNLVMED
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHH
MKYLKQEKLKILILNTKNIVTYIRDVFIGTLNSSIVHPREIFCEAIKKNGASIIICHNHP
HHHHHHCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCC
SGDPTPSKEDINITLRLKECGKLIGIDLLDHIIIGENKYVSMKEKGTI
CCCCCCCCCCEEEEEEEHHCCHHHHHHHHHHHHCCCCCEEECCCCCCC
>Mature Secondary Structure
MDNNFKIKDLPKNERPQERLIRYGAEVLSNSELLAVILRTGTKNQNIMMLASSLIKETGG
CCCCCEECCCCCCCCHHHHHHHHHHHHHCCCHHEEEEEECCCCCCCHHHHHHHHHHHCCC
LDQLFNQSIEELTKIKGIGVTKAVQILALSELSKRFKTYKSGNEYKISTPLDVSNLVMED
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHH
MKYLKQEKLKILILNTKNIVTYIRDVFIGTLNSSIVHPREIFCEAIKKNGASIIICHNHP
HHHHHHCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCC
SGDPTPSKEDINITLRLKECGKLIGIDLLDHIIIGENKYVSMKEKGTI
CCCCCCCCCCEEEEEEEHHCCHHHHHHHHHHHHCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA