Definition Clostridium botulinum A str. ATCC 3502, complete genome.
Accession NC_009495
Length 3,886,916

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The map label for this gene is pgmB [H]

Identifier: 148380812

GI number: 148380812

Start: 3033927

End: 3034598

Strand: Reverse

Name: pgmB [H]

Synonym: CBO2854

Alternate gene names: 148380812

Gene position: 3034598-3033927 (Counterclockwise)

Preceding gene: 148380814

Following gene: 148380811

Centisome position: 78.07

GC content: 28.72

Gene sequence:

>672_bases
ATGGACATAAAGGGTGTAATATTTGATTTTAATGGAACTATGCTTTATGATGGGGAATTTCAAGAAACATCTTGGAGAAG
ATATTTGCAAAGAAAAATAGGTAGAAAAGTTACAGATGATGAATTTCAAGAATATGTTCATGGCAGAAATGCAGATGTTA
CATTACCATATTTTTTAGGTACGAAGTTGTCTAAAAAAGAAATAGAAGAATTAGCAGAAGAAAAAGAAGTAACATATCGT
GAATTATGCCTAGCAGATAATAATAAATTTAAATTAGCTAATGGATTAGTAGAGTTTTTAAATTATTTAAAAGAGAGTAA
AATTCCTTTTACAATCGCTACTGCTTCAGGATTGAATAATGTTAAATTCTTTTTTGAGCATTTAGATTTAGCAAAATGGT
TTAATATATGTAATGTAGTGTATGATGATGGAACAATTCCAGGGAAGCCAGAACCAGAAATTTATATTAAGGCTGCTAAT
AAAATTGGAATTCATATAAATGAATGTATGGTTTTTGAAGATGCAAAGTCTGGCATAATGTCAGCACATAGAGCTGGTGC
TTACAAAATAGTTGGAGTTGCTTCTATGCTTGATAAAGAAGAAATGTTAAAAATAGATGGTGTAGATGAAGTAATTGAAG
ATTATACAAACGTTATAAATTTACTAAGATAA

Upstream 100 bases:

>100_bases
GTTATAATTGATTCATGATAATAAGATAAAGTGAAGTAAAAATTATTTGTATGAGATATACAGATAAATAGTAATTTATA
AGAAAGAGAGTAGATTTATT

Downstream 100 bases:

>100_bases
ATTCCAATTTATAGAGTCGAAATAACATAATTTTAGCTTTAGTTATATCATATCTTTTTTATATTAAGATGCATGATTAA
AATATCTTTAATGAAGGTAT

Product: HAD-superfamily hydrolase, subfamily IA

Products: NA

Alternate protein names: Beta-PGM [H]

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MDIKGVIFDFNGTMLYDGEFQETSWRRYLQRKIGRKVTDDEFQEYVHGRNADVTLPYFLGTKLSKKEIEELAEEKEVTYR
ELCLADNNKFKLANGLVEFLNYLKESKIPFTIATASGLNNVKFFFEHLDLAKWFNICNVVYDDGTIPGKPEPEIYIKAAN
KIGIHINECMVFEDAKSGIMSAHRAGAYKIVGVASMLDKEEMLKIDGVDEVIEDYTNVINLLR

Sequences:

>Translated_223_residues
MDIKGVIFDFNGTMLYDGEFQETSWRRYLQRKIGRKVTDDEFQEYVHGRNADVTLPYFLGTKLSKKEIEELAEEKEVTYR
ELCLADNNKFKLANGLVEFLNYLKESKIPFTIATASGLNNVKFFFEHLDLAKWFNICNVVYDDGTIPGKPEPEIYIKAAN
KIGIHINECMVFEDAKSGIMSAHRAGAYKIVGVASMLDKEEMLKIDGVDEVIEDYTNVINLLR
>Mature_223_residues
MDIKGVIFDFNGTMLYDGEFQETSWRRYLQRKIGRKVTDDEFQEYVHGRNADVTLPYFLGTKLSKKEIEELAEEKEVTYR
ELCLADNNKFKLANGLVEFLNYLKESKIPFTIATASGLNNVKFFFEHLDLAKWFNICNVVYDDGTIPGKPEPEIYIKAAN
KIGIHINECMVFEDAKSGIMSAHRAGAYKIVGVASMLDKEEMLKIDGVDEVIEDYTNVINLLR

Specific function: Reversible transformation of glucose 6-phosphate and beta-glucose 1-phosphate [H]

COG id: COG0637

COG function: function code R; Predicted phosphatase/phosphohexomutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family [H]

Homologues:

Organism=Escherichia coli, GI87082080, Length=218, Percent_Identity=25.2293577981651, Blast_Score=71, Evalue=5e-14,
Organism=Drosophila melanogaster, GI116008157, Length=227, Percent_Identity=25.9911894273128, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010976
- InterPro:   IPR010972
- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006402
- InterPro:   IPR005833 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: =5.4.2.6 [H]

Molecular weight: Translated: 25574; Mature: 25574

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKGVIFDFNGTMLYDGEFQETSWRRYLQRKIGRKVTDDEFQEYVHGRNADVTLPYFLG
CCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEHHHHC
TKLSKKEIEELAEEKEVTYRELCLADNNKFKLANGLVEFLNYLKESKIPFTIATASGLNN
CCCCHHHHHHHHHHHCCHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCEEEEECCCCCH
VKFFFEHLDLAKWFNICNVVYDDGTIPGKPEPEIYIKAANKIGIHINECMVFEDAKSGIM
HHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEECCEEEEEEEHEEEEHHHHHHHH
SAHRAGAYKIVGVASMLDKEEMLKIDGVDEVIEDYTNVINLLR
HHHHCCCCCEEHHHHHHCHHHHHEECCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDIKGVIFDFNGTMLYDGEFQETSWRRYLQRKIGRKVTDDEFQEYVHGRNADVTLPYFLG
CCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEHHHHC
TKLSKKEIEELAEEKEVTYRELCLADNNKFKLANGLVEFLNYLKESKIPFTIATASGLNN
CCCCHHHHHHHHHHHCCHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCEEEEECCCCCH
VKFFFEHLDLAKWFNICNVVYDDGTIPGKPEPEIYIKAANKIGIHINECMVFEDAKSGIM
HHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEECCEEEEEEEHEEEEHHHHHHHH
SAHRAGAYKIVGVASMLDKEEMLKIDGVDEVIEDYTNVINLLR
HHHHCCCCCEEHHHHHHCHHHHHEECCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9084169; 11337471 [H]