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The map label for this gene is rnjA [H]

Identifier: 148380514

GI number: 148380514

Start: 2696312

End: 2698015

Strand: Reverse

Name: rnjA [H]

Synonym: CBO2559

Alternate gene names: 148380514

Gene position: 2698015-2696312 (Counterclockwise)

Preceding gene: 148380515

Following gene: 148380513

Centisome position: 69.41

GC content: 32.45

Gene sequence:

>1704_bases
GTGGACAAAGAAAAAGATAAAGCAAAAGATAGAGTAAAAGATAAGGAGAAGGATAAAATAAAGATTATTCCTTTAGGCGG
CTTAAATGAAATTGGCAAAAATTTAACTGCTATAGAATACAAAAATGATATAGTAGTTATAGATTGTGGCCTTAAATTTC
CAGACGACGATATGTTAGGAATAGATGTAGTTATTCCTGACATAACTTATCTTAAAAAGAATATTAATAAAGTAAAAGGT
ATATTTTTAACTCATGGTCATGAAGATCACATAGGAGCATTACCCTATGTTCTGAGAGCAGTAAATGTACCAGTATACGG
AACTAAGCTTACATTAGGTATAGTAGAAACCAAGTTAAAAGAACATGGACTACTAAGTTCTGTGGAGTTAAAATGCATAA
AGCCAAGGGAAATAATTAGACTTCAAAATGTTTCTGTGGAATTTATAAGAACTAGCCACAGTATAGCAGACACAGTAGCT
ATAGCTATACATACACCTTTAGGGGTTGTTCTTCATACAGGAGACTTTAAAATAGACTACACTCCTATAGATGGTCATGT
TACAGATTTAGCTAGATTTGCTGAAATAGGTAAGCGTGGAGTTATTGCTATGATGGCAGATAGTACAAATGTAGAAAGAC
CAGGCTATACCATGTCAGAAAGTACTGTAGGGGAAGCTTTTCTAAATATATTCTCAGGAGTCAAGGGAAGAATAATTGTT
GCTACTTTTGCATCTCATATCCATAGAATCCAACAAATAATAAGGGCTGCTGAAAAATTTAAAAGAAAAGTAGCGGTTTC
TGGTAGAAGTATGGAAAATATTATGGAAGTAGCTATGAAGCTTGGATATATAAAAGCAGAAAAAAATATATTTATAAGCA
TAGATGCTATAAATAAATATCCAGATGACCAAGTAGTTATAATAACTACAGGAAGTCAAGGAGAGCCTATGTCAGCTCTT
TCTAGGATGGCAGCTTCAGAGCATAAAAAAGTAAATATAAAGCCCGGTGATAAGGTAATTATATCTGCAACACCTATCCC
AGGTAATGAAAAATTAGTATCTAGGGTGATAAATCAGTTATTTAAAAAGGGTGCAGATGTTATATATGAAACACTTGCAG
ATATCCATGTATCTGGTCATGCATGCCAGGAAGAACTTAAACTTATGCATACATTAGTAAGACCTAAATATTTTATACCT
GTTCATGGAGAATATAGACACTTAAAACAACATGGAGAACTTGCCTGTCAATTAGGATTGCCAGAGAATCATGTTATGGT
TTCAGATATAGGTGATGTTATAGAAGTAAGTAGAGAATGTATTAGAAAAAATGGCTCTGTAGTGTCAGGTCAAGTCTTTG
TAGATGGACTAGGTGTAGGAGATGTAGGGAATATAGTATTAAGAGATAGAAAGCATTTATCTCAAGATGGTATATTAACA
GTAGTTGTTACTATAGAAAAGGTTTCAGGCTCTGTTATTGCAGGTCCTGATATAATATCAAGAGGTTTTGTTTATGTAAG
AGAATCAGAGGATTTAATGGAAGAAGCTAAAGATTTAGTAAAAAAAGCTCTAGAAGAATGTGAAAGAAATCATATTACAG
AATGGGCTGCAATTAAAACAAATATAAAAGATGTTTTAAGAGGATTCTTATATGAAAAAACAAAAAGAAAACCTATGATA
TTACCAATTATAATGGAAATATAG

Upstream 100 bases:

>100_bases
ATAGTTTAAAGTTCTACGGTATCTGCAAGGAATGTCAAGGAAAATAAATAATAAAACTATGATGAAAACATAAAAGAAAA
AGGAGGGAAGAAGTTTGCGA

Downstream 100 bases:

>100_bases
TACGGTATATTAAAAGAGCTCATAAAAATAATTTTTAATGGAATATTTCAAAGAACTCTTTAATACCTAATAATTTTAAA
AAAAGTAAGCTATGAATTTT

Product: RNA-metabolizing metallo-beta-lactamase family protein

Products: NA

Alternate protein names: RNase J1 [H]

Number of amino acids: Translated: 567; Mature: 567

Protein sequence:

>567_residues
MDKEKDKAKDRVKDKEKDKIKIIPLGGLNEIGKNLTAIEYKNDIVVIDCGLKFPDDDMLGIDVVIPDITYLKKNINKVKG
IFLTHGHEDHIGALPYVLRAVNVPVYGTKLTLGIVETKLKEHGLLSSVELKCIKPREIIRLQNVSVEFIRTSHSIADTVA
IAIHTPLGVVLHTGDFKIDYTPIDGHVTDLARFAEIGKRGVIAMMADSTNVERPGYTMSESTVGEAFLNIFSGVKGRIIV
ATFASHIHRIQQIIRAAEKFKRKVAVSGRSMENIMEVAMKLGYIKAEKNIFISIDAINKYPDDQVVIITTGSQGEPMSAL
SRMAASEHKKVNIKPGDKVIISATPIPGNEKLVSRVINQLFKKGADVIYETLADIHVSGHACQEELKLMHTLVRPKYFIP
VHGEYRHLKQHGELACQLGLPENHVMVSDIGDVIEVSRECIRKNGSVVSGQVFVDGLGVGDVGNIVLRDRKHLSQDGILT
VVVTIEKVSGSVIAGPDIISRGFVYVRESEDLMEEAKDLVKKALEECERNHITEWAAIKTNIKDVLRGFLYEKTKRKPMI
LPIIMEI

Sequences:

>Translated_567_residues
MDKEKDKAKDRVKDKEKDKIKIIPLGGLNEIGKNLTAIEYKNDIVVIDCGLKFPDDDMLGIDVVIPDITYLKKNINKVKG
IFLTHGHEDHIGALPYVLRAVNVPVYGTKLTLGIVETKLKEHGLLSSVELKCIKPREIIRLQNVSVEFIRTSHSIADTVA
IAIHTPLGVVLHTGDFKIDYTPIDGHVTDLARFAEIGKRGVIAMMADSTNVERPGYTMSESTVGEAFLNIFSGVKGRIIV
ATFASHIHRIQQIIRAAEKFKRKVAVSGRSMENIMEVAMKLGYIKAEKNIFISIDAINKYPDDQVVIITTGSQGEPMSAL
SRMAASEHKKVNIKPGDKVIISATPIPGNEKLVSRVINQLFKKGADVIYETLADIHVSGHACQEELKLMHTLVRPKYFIP
VHGEYRHLKQHGELACQLGLPENHVMVSDIGDVIEVSRECIRKNGSVVSGQVFVDGLGVGDVGNIVLRDRKHLSQDGILT
VVVTIEKVSGSVIAGPDIISRGFVYVRESEDLMEEAKDLVKKALEECERNHITEWAAIKTNIKDVLRGFLYEKTKRKPMI
LPIIMEI
>Mature_567_residues
MDKEKDKAKDRVKDKEKDKIKIIPLGGLNEIGKNLTAIEYKNDIVVIDCGLKFPDDDMLGIDVVIPDITYLKKNINKVKG
IFLTHGHEDHIGALPYVLRAVNVPVYGTKLTLGIVETKLKEHGLLSSVELKCIKPREIIRLQNVSVEFIRTSHSIADTVA
IAIHTPLGVVLHTGDFKIDYTPIDGHVTDLARFAEIGKRGVIAMMADSTNVERPGYTMSESTVGEAFLNIFSGVKGRIIV
ATFASHIHRIQQIIRAAEKFKRKVAVSGRSMENIMEVAMKLGYIKAEKNIFISIDAINKYPDDQVVIITTGSQGEPMSAL
SRMAASEHKKVNIKPGDKVIISATPIPGNEKLVSRVINQLFKKGADVIYETLADIHVSGHACQEELKLMHTLVRPKYFIP
VHGEYRHLKQHGELACQLGLPENHVMVSDIGDVIEVSRECIRKNGSVVSGQVFVDGLGVGDVGNIVLRDRKHLSQDGILT
VVVTIEKVSGSVIAGPDIISRGFVYVRESEDLMEEAKDLVKKALEECERNHITEWAAIKTNIKDVLRGFLYEKTKRKPMI
LPIIMEI

Specific function: Cleaves the 5'-leader sequence of certain mRNAs. May play a role in maturation and stability of specific mRNAs. Is also required for the maturation of the 16S rRNA. Acts preferentially on 16S rRNA precursors after association of the 30S and 50S ribosomal

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 62915; Mature: 62915

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKEKDKAKDRVKDKEKDKIKIIPLGGLNEIGKNLTAIEYKNDIVVIDCGLKFPDDDMLG
CCCCHHHHHHHHCCCCCCCEEEEECCCHHHHCCCCEEEEECCCEEEEECCCCCCCCCCEE
IDVVIPDITYLKKNINKVKGIFLTHGHEDHIGALPYVLRAVNVPVYGTKLTLGIVETKLK
EEEEECCHHHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHHCCCEECCEEEEHHHHHHHH
EHGLLSSVELKCIKPREIIRLQNVSVEFIRTSHSIADTVAIAIHTPLGVVLHTGDFKIDY
HCCCCCCCEEEEECHHHHHEEECCEEEEEECCCHHHHEEEEEEECCCEEEEECCCEEEEE
TPIDGHVTDLARFAEIGKRGVIAMMADSTNVERPGYTMSESTVGEAFLNIFSGVKGRIIV
EECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE
ATFASHIHRIQQIIRAAEKFKRKVAVSGRSMENIMEVAMKLGYIKAEKNIFISIDAINKY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCEEEECCCEEEEEEECCCC
PDDQVVIITTGSQGEPMSALSRMAASEHKKVNIKPGDKVIISATPIPGNEKLVSRVINQL
CCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCCHHHHHHHHHHH
FKKGADVIYETLADIHVSGHACQEELKLMHTLVRPKYFIPVHGEYRHLKQHGELACQLGL
HHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHCCCEEEEECC
PENHVMVSDIGDVIEVSRECIRKNGSVVSGQVFVDGLGVGDVGNIVLRDRKHLSQDGILT
CCCCEEHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCEECCCHHCCCCCEEE
VVVTIEKVSGSVIAGPDIISRGFVYVRESEDLMEEAKDLVKKALEECERNHITEWAAIKT
EEEEEEECCCCEEECCHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
NIKDVLRGFLYEKTKRKPMILPIIMEI
HHHHHHHHHHHHHHCCCCEEEEEEECC
>Mature Secondary Structure
MDKEKDKAKDRVKDKEKDKIKIIPLGGLNEIGKNLTAIEYKNDIVVIDCGLKFPDDDMLG
CCCCHHHHHHHHCCCCCCCEEEEECCCHHHHCCCCEEEEECCCEEEEECCCCCCCCCCEE
IDVVIPDITYLKKNINKVKGIFLTHGHEDHIGALPYVLRAVNVPVYGTKLTLGIVETKLK
EEEEECCHHHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHHCCCEECCEEEEHHHHHHHH
EHGLLSSVELKCIKPREIIRLQNVSVEFIRTSHSIADTVAIAIHTPLGVVLHTGDFKIDY
HCCCCCCCEEEEECHHHHHEEECCEEEEEECCCHHHHEEEEEEECCCEEEEECCCEEEEE
TPIDGHVTDLARFAEIGKRGVIAMMADSTNVERPGYTMSESTVGEAFLNIFSGVKGRIIV
EECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE
ATFASHIHRIQQIIRAAEKFKRKVAVSGRSMENIMEVAMKLGYIKAEKNIFISIDAINKY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCEEEECCCEEEEEEECCCC
PDDQVVIITTGSQGEPMSALSRMAASEHKKVNIKPGDKVIISATPIPGNEKLVSRVINQL
CCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCCHHHHHHHHHHH
FKKGADVIYETLADIHVSGHACQEELKLMHTLVRPKYFIPVHGEYRHLKQHGELACQLGL
HHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHCCCEEEEECC
PENHVMVSDIGDVIEVSRECIRKNGSVVSGQVFVDGLGVGDVGNIVLRDRKHLSQDGILT
CCCCEEHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCEECCCHHCCCCCEEE
VVVTIEKVSGSVIAGPDIISRGFVYVRESEDLMEEAKDLVKKALEECERNHITEWAAIKT
EEEEEEECCCCEEECCHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
NIKDVLRGFLYEKTKRKPMILPIIMEI
HHHHHHHHHHHHHHCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969500; 9384377 [H]