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The map label for this gene is xerC [H]

Identifier: 148380317

GI number: 148380317

Start: 2505928

End: 2506923

Strand: Reverse

Name: xerC [H]

Synonym: CBO2364

Alternate gene names: 148380317

Gene position: 2506923-2505928 (Counterclockwise)

Preceding gene: 148380318

Following gene: 148380316

Centisome position: 64.5

GC content: 31.63

Gene sequence:

>996_bases
ATGTATAGTACAAGTGCAAAGAATGAAGTTGTAATTAAATTAGTAGGTAAGCTGTCTATGGAATTTGAGGGAATAGACCA
GTTAAAGGTTAGAAGCATAGTGGAGGAAGTGTTATATAAATACAGTATATTGCCAGAAGAGACAGGGCTAATGGCGAGTG
ATATAGAAGAAAAATTACAAATATACTTAGCATCTAAGAAACTGGATGGCTTAAGTATAAAAACATTAAGAAACTATCAA
TATAATTTAGCAATATTTGCAAACCACTTAAGAAAGCCATTGGTAGCTATAAATACAATGGATCTTAGAATGTTTTTAGC
AGTTAGATGCAAGAGCATGAAACAAAGCAGTGTTAATGGACAAATCTCTATATTAAAAAGTTTCTTTGGCTGGCTTGCAG
ATGAAGAGTATATACCTAAAAATCCAGCGAAGAAGTTAAAGCAAACAAAAGAGCCAAAGAGATTAAGACATGCTATGACA
GAAGAAGAAATAGAACTTTTAAGACAAGCTTGTAAAACAGATAGAGAAAAGGCACTAGTAGAATTTTTAATATCTACTGG
GTGCAGATTATCAGAAGCGGTTGGCGTAAATAAAGATGATATAAACTGGTATGAAATGTCTTTAAATGTAATAGGTAAGG
GTGATAAAGAACGCAAGGTATATTTTAGTACAAAAGCTAAAATTTTATTAAAAAAATATTTGCTAGCTAGAAGTGATGAA
AATATAGCTTTATTTGTAACTAGTAAAAAGCCTTATGGCAGATTGGGTGGCAGAAGTGTTCAAAGAGAGATTAAAAAAAT
TGCGAGTAGAGCAGGTATAAACAAATCTATTTATCCTCATTTATTTAGACATTCTTTTGCTACTAATAAACTAAATGCTG
GTATGCCAATGCCAGTTATACAGCACTTAATGGGTCACGAGAGTCCAGCAACTACACAGATATATGCAGAATTATCAGAA
GAAAACATAAAACATGAATATAAGAAAATATCTTAA

Upstream 100 bases:

>100_bases
CATCATTACAAGATATGTTAATGTCATAATTCAAAAATTAAACCCAGGATATAAATAGAATTTAAAAATGTCTTTAATGG
CAATATAGGGAGGTATTTAT

Downstream 100 bases:

>100_bases
TAAGAAGGTGAAGTAAATGCGTAAACTTTCAATGATGGGATCATCCAAATACAAATTTAATCCAGAGCAGCTTAATGAAG
ATGTTAAAAAGCATAGAGAA

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MYSTSAKNEVVIKLVGKLSMEFEGIDQLKVRSIVEEVLYKYSILPEETGLMASDIEEKLQIYLASKKLDGLSIKTLRNYQ
YNLAIFANHLRKPLVAINTMDLRMFLAVRCKSMKQSSVNGQISILKSFFGWLADEEYIPKNPAKKLKQTKEPKRLRHAMT
EEEIELLRQACKTDREKALVEFLISTGCRLSEAVGVNKDDINWYEMSLNVIGKGDKERKVYFSTKAKILLKKYLLARSDE
NIALFVTSKKPYGRLGGRSVQREIKKIASRAGINKSIYPHLFRHSFATNKLNAGMPMPVIQHLMGHESPATTQIYAELSE
ENIKHEYKKIS

Sequences:

>Translated_331_residues
MYSTSAKNEVVIKLVGKLSMEFEGIDQLKVRSIVEEVLYKYSILPEETGLMASDIEEKLQIYLASKKLDGLSIKTLRNYQ
YNLAIFANHLRKPLVAINTMDLRMFLAVRCKSMKQSSVNGQISILKSFFGWLADEEYIPKNPAKKLKQTKEPKRLRHAMT
EEEIELLRQACKTDREKALVEFLISTGCRLSEAVGVNKDDINWYEMSLNVIGKGDKERKVYFSTKAKILLKKYLLARSDE
NIALFVTSKKPYGRLGGRSVQREIKKIASRAGINKSIYPHLFRHSFATNKLNAGMPMPVIQHLMGHESPATTQIYAELSE
ENIKHEYKKIS
>Mature_331_residues
MYSTSAKNEVVIKLVGKLSMEFEGIDQLKVRSIVEEVLYKYSILPEETGLMASDIEEKLQIYLASKKLDGLSIKTLRNYQ
YNLAIFANHLRKPLVAINTMDLRMFLAVRCKSMKQSSVNGQISILKSFFGWLADEEYIPKNPAKKLKQTKEPKRLRHAMT
EEEIELLRQACKTDREKALVEFLISTGCRLSEAVGVNKDDINWYEMSLNVIGKGDKERKVYFSTKAKILLKKYLLARSDE
NIALFVTSKKPYGRLGGRSVQREIKKIASRAGINKSIYPHLFRHSFATNKLNAGMPMPVIQHLMGHESPATTQIYAELSE
ENIKHEYKKIS

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=289, Percent_Identity=31.1418685121107, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789261, Length=274, Percent_Identity=31.3868613138686, Blast_Score=121, Evalue=8e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37872; Mature: 37872

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSTSAKNEVVIKLVGKLSMEFEGIDQLKVRSIVEEVLYKYSILPEETGLMASDIEEKLQ
CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
IYLASKKLDGLSIKTLRNYQYNLAIFANHLRKPLVAINTMDLRMFLAVRCKSMKQSSVNG
HHHHHCCCCCCCHHHHHCCCCHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHHCCCC
QISILKSFFGWLADEEYIPKNPAKKLKQTKEPKRLRHAMTEEEIELLRQACKTDREKALV
HHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHCHHHHHHH
EFLISTGCRLSEAVGVNKDDINWYEMSLNVIGKGDKERKVYFSTKAKILLKKYLLARSDE
HHHHHCCCCHHHHCCCCCCCCCEEEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHCCCC
NIALFVTSKKPYGRLGGRSVQREIKKIASRAGINKSIYPHLFRHSFATNKLNAGMPMPVI
CEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
QHLMGHESPATTQIYAELSEENIKHEYKKIS
HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYSTSAKNEVVIKLVGKLSMEFEGIDQLKVRSIVEEVLYKYSILPEETGLMASDIEEKLQ
CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
IYLASKKLDGLSIKTLRNYQYNLAIFANHLRKPLVAINTMDLRMFLAVRCKSMKQSSVNG
HHHHHCCCCCCCHHHHHCCCCHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHHCCCC
QISILKSFFGWLADEEYIPKNPAKKLKQTKEPKRLRHAMTEEEIELLRQACKTDREKALV
HHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHCHHHHHHH
EFLISTGCRLSEAVGVNKDDINWYEMSLNVIGKGDKERKVYFSTKAKILLKKYLLARSDE
HHHHHCCCCHHHHCCCCCCCCCEEEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHCCCC
NIALFVTSKKPYGRLGGRSVQREIKKIASRAGINKSIYPHLFRHSFATNKLNAGMPMPVI
CEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
QHLMGHESPATTQIYAELSEENIKHEYKKIS
HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA