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The map label for this gene is ubiD [H]

Identifier: 148361265

GI number: 148361265

Start: 3491105

End: 3492571

Strand: Reverse

Name: ubiD [H]

Synonym: LPC_3239

Alternate gene names: 148361265

Gene position: 3492571-3491105 (Counterclockwise)

Preceding gene: 148361266

Following gene: 148361264

Centisome position: 97.65

GC content: 45.13

Gene sequence:

>1467_bases
ATGAAGTATTCAGATCTGAGAGATTTCATAGCCCAACTTGAATCACGTGAATTATTAAAACGTATTGATTATCCTGTATC
ACCTCATCTTGAGATGACCGTAGTCAGCGATAAAGTGTTGCGCTCAGGAGGGCCAGCTCTTCTGTTTACCAATACCCCCA
ATTACAACATGCCTGTACTGACCAATCTTTTTGGCACGGTAGAGCGCGTGGCTTTGGGAATGGGTGAGGAATCAATAGTG
GCTTTGAGGGAGATTGGAAAATTATTGGCTGCTTTAAAGGAACCCGATCCTCCCAAAGGCTTCAAAGACGCTTTTAGCAA
GTTGCCCTTATTGAAGCAAGCGCTGAATATGGCACCCAAATATGTCAGTGGAGCCGAGTGCCAGACTCATGTGTGGGAAA
AGGATGAAGTGGATTTAACGTTATTGCCCATCCAAACGTGTTGGCCCGGAGATGTTGCTCCTCTAATTACCTGGGGTTTG
GTTACTACTCGTGGCCCACACCAGTCCAGAGAAAACATGGGCATCTATCGCCAGCAACTATTAAGTAAAAACAAATTGAT
CATGCGCTGGTTATCTCACCGCGGAGGTGCTTTGGATTACCAGGCCTGGCAACAAGAATATCCCCAAGAACGTTTCCCTG
TTGCGGTGACTTTAGGCGCTGATCCAGCCACCATACTGGCAGCAGTTACTCCCGTTCCTGATACTTTGTCTGAATACGCT
TTTGCGGGCTTGCTTAGAGGACAACGAACCCGGTTGACTCGATGCATTGGCAATGATTTGCATGTTCCAGCCAGCGCAGA
AATTGTTTTGGAAGGTTACCTGGAGCCAGGAAATGAGGCACCCGAAGGGCCTTATGGCGATCACACCGGTTATTATAATG
AAGTCCAATCTTTTCCTGTTTTTACGGTAGAGCGTATTACTCATCGCGATAAACCTATTTACCACAGTACTTATACCGGA
AGACCGCCAGATGAGCCAGCCATTTTGGGGGTTGCCTTAAATGAAGTGTTCATTCCCTTGTTGCAAAAACAATTCCCAGA
GATTGTGGATTTTTATTTGCCGCCAGAAGGATGCTCTTATCGTTTGGCTGTAGTCACTATAAAAAAGCAATATCCAGGAC
ATGCTAAACGTATTATGATGGCTGTTTGGTCTTTCTTGCGCCAGTTTATGTATACCAAGTTCGTCATTGTTTGTGATGAT
GATGTGGACGCGCGCAATTGGCAAGATGTCATATGGGCAATGACGACACGCATGGATCCGTCCCGCGATACAGTCATGGT
AGAAAATACACCCATTGATTATCTGGATTTCGCTTCCCCAGTTTCAGGATTGGGTTCCAAGATGGGCATGGATGCTACCA
GTAAATGGCCAGGAGAAACACAAAGAGAATGGGGTAAACCAATTACAATGGATGAAGATGTGCTTAATAGAGTAAATGGT
TATTGGTCCTTATTAGGATTAAAATAA

Upstream 100 bases:

>100_bases
GTTCAAATTCGCCTTATTTTCAGGTTTATAATTCATGCTCATAGCCTGTATTAAGCTGTGCTGGTACGGGTTTACAGTAA
GCTTCTTTTTGAGATAATTA

Downstream 100 bases:

>100_bases
TGACAGATAAAATAATTCAAGCTCAGGTGGAGGACATTTCCCCTTTAACGGACAGCATCGTGCGATTGGTCTTAATGCCT
GATGAATACGTTGATTATCA

Product: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Products: 2-octaprenylphenol; CO2 [C]

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 488; Mature: 488

Protein sequence:

>488_residues
MKYSDLRDFIAQLESRELLKRIDYPVSPHLEMTVVSDKVLRSGGPALLFTNTPNYNMPVLTNLFGTVERVALGMGEESIV
ALREIGKLLAALKEPDPPKGFKDAFSKLPLLKQALNMAPKYVSGAECQTHVWEKDEVDLTLLPIQTCWPGDVAPLITWGL
VTTRGPHQSRENMGIYRQQLLSKNKLIMRWLSHRGGALDYQAWQQEYPQERFPVAVTLGADPATILAAVTPVPDTLSEYA
FAGLLRGQRTRLTRCIGNDLHVPASAEIVLEGYLEPGNEAPEGPYGDHTGYYNEVQSFPVFTVERITHRDKPIYHSTYTG
RPPDEPAILGVALNEVFIPLLQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYPGHAKRIMMAVWSFLRQFMYTKFVIVCDD
DVDARNWQDVIWAMTTRMDPSRDTVMVENTPIDYLDFASPVSGLGSKMGMDATSKWPGETQREWGKPITMDEDVLNRVNG
YWSLLGLK

Sequences:

>Translated_488_residues
MKYSDLRDFIAQLESRELLKRIDYPVSPHLEMTVVSDKVLRSGGPALLFTNTPNYNMPVLTNLFGTVERVALGMGEESIV
ALREIGKLLAALKEPDPPKGFKDAFSKLPLLKQALNMAPKYVSGAECQTHVWEKDEVDLTLLPIQTCWPGDVAPLITWGL
VTTRGPHQSRENMGIYRQQLLSKNKLIMRWLSHRGGALDYQAWQQEYPQERFPVAVTLGADPATILAAVTPVPDTLSEYA
FAGLLRGQRTRLTRCIGNDLHVPASAEIVLEGYLEPGNEAPEGPYGDHTGYYNEVQSFPVFTVERITHRDKPIYHSTYTG
RPPDEPAILGVALNEVFIPLLQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYPGHAKRIMMAVWSFLRQFMYTKFVIVCDD
DVDARNWQDVIWAMTTRMDPSRDTVMVENTPIDYLDFASPVSGLGSKMGMDATSKWPGETQREWGKPITMDEDVLNRVNG
YWSLLGLK
>Mature_488_residues
MKYSDLRDFIAQLESRELLKRIDYPVSPHLEMTVVSDKVLRSGGPALLFTNTPNYNMPVLTNLFGTVERVALGMGEESIV
ALREIGKLLAALKEPDPPKGFKDAFSKLPLLKQALNMAPKYVSGAECQTHVWEKDEVDLTLLPIQTCWPGDVAPLITWGL
VTTRGPHQSRENMGIYRQQLLSKNKLIMRWLSHRGGALDYQAWQQEYPQERFPVAVTLGADPATILAAVTPVPDTLSEYA
FAGLLRGQRTRLTRCIGNDLHVPASAEIVLEGYLEPGNEAPEGPYGDHTGYYNEVQSFPVFTVERITHRDKPIYHSTYTG
RPPDEPAILGVALNEVFIPLLQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYPGHAKRIMMAVWSFLRQFMYTKFVIVCDD
DVDARNWQDVIWAMTTRMDPSRDTVMVENTPIDYLDFASPVSGLGSKMGMDATSKWPGETQREWGKPITMDEDVLNRVNG
YWSLLGLK

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=487, Percent_Identity=74.5379876796715, Blast_Score=777, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=447, Percent_Identity=25.2796420581655, Blast_Score=129, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: NA

Molecular weight: Translated: 55027; Mature: 55027

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYSDLRDFIAQLESRELLKRIDYPVSPHLEMTVVSDKVLRSGGPALLFTNTPNYNMPVL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHCCCCEEEEECCCCCCCCHH
TNLFGTVERVALGMGEESIVALREIGKLLAALKEPDPPKGFKDAFSKLPLLKQALNMAPK
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHHCCCC
YVSGAECQTHVWEKDEVDLTLLPIQTCWPGDVAPLITWGLVTTRGPHQSRENMGIYRQQL
CCCCCCCHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
LSKNKLIMRWLSHRGGALDYQAWQQEYPQERFPVAVTLGADPATILAAVTPVPDTLSEYA
HCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEEECCCCHHHHEEECCCCHHHHHHH
FAGLLRGQRTRLTRCIGNDLHVPASAEIVLEGYLEPGNEAPEGPYGDHTGYYNEVQSFPV
HHHHHCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCC
FTVERITHRDKPIYHSTYTGRPPDEPAILGVALNEVFIPLLQKQFPEIVDFYLPPEGCSY
HHHHHHHCCCCCCEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
RLAVVTIKKQYPGHAKRIMMAVWSFLRQFMYTKFVIVCDDDVDARNWQDVIWAMTTRMDP
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHCCCC
SRDTVMVENTPIDYLDFASPVSGLGSKMGMDATSKWPGETQREWGKPITMDEDVLNRVNG
CCCEEEEECCCCCHHHHHCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHCC
YWSLLGLK
HHEEECCC
>Mature Secondary Structure
MKYSDLRDFIAQLESRELLKRIDYPVSPHLEMTVVSDKVLRSGGPALLFTNTPNYNMPVL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHCCCCEEEEECCCCCCCCHH
TNLFGTVERVALGMGEESIVALREIGKLLAALKEPDPPKGFKDAFSKLPLLKQALNMAPK
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHHCCCC
YVSGAECQTHVWEKDEVDLTLLPIQTCWPGDVAPLITWGLVTTRGPHQSRENMGIYRQQL
CCCCCCCHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
LSKNKLIMRWLSHRGGALDYQAWQQEYPQERFPVAVTLGADPATILAAVTPVPDTLSEYA
HCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEEECCCCHHHHEEECCCCHHHHHHH
FAGLLRGQRTRLTRCIGNDLHVPASAEIVLEGYLEPGNEAPEGPYGDHTGYYNEVQSFPV
HHHHHCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCC
FTVERITHRDKPIYHSTYTGRPPDEPAILGVALNEVFIPLLQKQFPEIVDFYLPPEGCSY
HHHHHHHCCCCCCEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
RLAVVTIKKQYPGHAKRIMMAVWSFLRQFMYTKFVIVCDDDVDARNWQDVIWAMTTRMDP
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHCCCC
SRDTVMVENTPIDYLDFASPVSGLGSKMGMDATSKWPGETQREWGKPITMDEDVLNRVNG
CCCEEEEECCCCCHHHHHCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHCC
YWSLLGLK
HHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 3-octaprenyl-4-hydroxybenzoate [C]

Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA