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The map label for this gene is tnpR [H]

Identifier: 148361248

GI number: 148361248

Start: 3476493

End: 3476732

Strand: Reverse

Name: tnpR [H]

Synonym: LPC_3222

Alternate gene names: 148361248

Gene position: 3476732-3476493 (Counterclockwise)

Preceding gene: 148361249

Following gene: 148361247

Centisome position: 97.21

GC content: 36.67

Gene sequence:

>240_bases
ATGTTTTATGTCTTTGGAGCACTTTCTGAGTTTGAACGTAATTTAATTAAAGAGAGAACACTTGCAGGTCTTGGAGCTGC
TAGAGCTAGAGATCGCCAAGGTGGTAGGCCTGAAAAACTTAGTGATGAGCAAAAAGAGCTAGTGAAGACTCTTTACGCCA
ATAAAAAACATTCAATTCAATCAATTTGTAAGATGGTTGGTGTGGGAAAGACTACACTCTATAAGTATATAAACGAATAA

Upstream 100 bases:

>100_bases
TAAACATCTTATTTCTTATGTAAGTAATCTTGAAGAAAAAGTCATTGGCTTTCATAGCATTACTGAGTCGATCAATACTG
AGACAACTTCTGGAAAGTTT

Downstream 100 bases:

>100_bases
ATGTAAAAGTATAAAAACTTAATGTTAAGACATAAATAAAGGAATAATAATGTTTTATTTATCTTTATGGGGCGCCATTA
CTGGTACGATAGGAACTATT

Product: resolvase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 79

Protein sequence:

>79_residues
MFYVFGALSEFERNLIKERTLAGLGAARARDRQGGRPEKLSDEQKELVKTLYANKKHSIQSICKMVGVGKTTLYKYINE

Sequences:

>Translated_79_residues
MFYVFGALSEFERNLIKERTLAGLGAARARDRQGGRPEKLSDEQKELVKTLYANKKHSIQSICKMVGVGKTTLYKYINE
>Mature_79_residues
MFYVFGALSEFERNLIKERTLAGLGAARARDRQGGRPEKLSDEQKELVKTLYANKKHSIQSICKMVGVGKTTLYKYINE

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 8997; Mature: 8997

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYVFGALSEFERNLIKERTLAGLGAARARDRQGGRPEKLSDEQKELVKTLYANKKHSIQ
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHH
SICKMVGVGKTTLYKYINE
HHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure
MFYVFGALSEFERNLIKERTLAGLGAARARDRQGGRPEKLSDEQKELVKTLYANKKHSIQ
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHH
SICKMVGVGKTTLYKYINE
HHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2170815; 2555186 [H]