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The map label for this gene is rbfA

Identifier: 148361085

GI number: 148361085

Start: 3299340

End: 3299711

Strand: Reverse

Name: rbfA

Synonym: LPC_3056

Alternate gene names: 148361085

Gene position: 3299711-3299340 (Counterclockwise)

Preceding gene: 148361086

Following gene: 148361084

Centisome position: 92.26

GC content: 37.9

Gene sequence:

>372_bases
ATGAGTAATAATTTTAAGCGAACTGACAGAATTGCTGAGATGATTCAGCGCAAATTAGCTTTGATCATTCCTCAGGAAAT
AAAAGATCCTCGCTTGAAGGGTTTTGTTACTATTTCTGCAGTTAAAGTGGCTGCGGATTTAGGTCACGCCAAAATTTATT
TTACTGTTCTTAATGAAGATAAATCGGTGGTGACCAATATATTAAATGGTGCAGCCAGTTATTTGAGGAGCGCTCTGGCA
AGAAGTATTACTCTACGCACTGTGCCGCAACTTCATTTTATTTATGATGAATCGATTGAGTATGGACAGCGGTTAAGCCG
ATTAATTGATGAAGTAAATCCCCCTGATTCAAGTAGTGATGACAACAATTGA

Upstream 100 bases:

>100_bases
CTTTGAATGTGGTATCGGCGTAAAAAACTACAACGATGTGAAGCCTGGGGATTTAATCGAGGTTTTTGAGACAGTTGAAA
TTAAGCGTGACTTATAGAAA

Downstream 100 bases:

>100_bases
ATCTCAGTGTTCCATAGATGGAATCCTGCTATTAAATAAACCACAAGGAATGACCTCTAACGCTGCTCTTCAGAAAGCCA
AACATTTGTTTGGTGCTAAA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MSNNFKRTDRIAEMIQRKLALIIPQEIKDPRLKGFVTISAVKVAADLGHAKIYFTVLNEDKSVVTNILNGAASYLRSALA
RSITLRTVPQLHFIYDESIEYGQRLSRLIDEVNPPDSSSDDNN

Sequences:

>Translated_123_residues
MSNNFKRTDRIAEMIQRKLALIIPQEIKDPRLKGFVTISAVKVAADLGHAKIYFTVLNEDKSVVTNILNGAASYLRSALA
RSITLRTVPQLHFIYDESIEYGQRLSRLIDEVNPPDSSSDDNN
>Mature_122_residues
SNNFKRTDRIAEMIQRKLALIIPQEIKDPRLKGFVTISAVKVAADLGHAKIYFTVLNEDKSVVTNILNGAASYLRSALAR
SITLRTVPQLHFIYDESIEYGQRLSRLIDEVNPPDSSSDDNN

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=133, Percent_Identity=41.3533834586466, Blast_Score=99, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_LEGPA (Q5X1C4)

Other databases:

- EMBL:   CR628336
- RefSeq:   YP_125124.1
- ProteinModelPortal:   Q5X1C4
- SMR:   Q5X1C4
- STRING:   Q5X1C4
- GeneID:   3116512
- GenomeReviews:   CR628336_GR
- KEGG:   lpp:lpp2819
- LegioList:   lpp2819
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   PRK00521
- BioCyc:   LPNE297246:LPP2819-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13833; Mature: 13702

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNNFKRTDRIAEMIQRKLALIIPQEIKDPRLKGFVTISAVKVAADLGHAKIYFTVLNED
CCCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCC
KSVVTNILNGAASYLRSALARSITLRTVPQLHFIYDESIEYGQRLSRLIDEVNPPDSSSD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
DNN
CCC
>Mature Secondary Structure 
SNNFKRTDRIAEMIQRKLALIIPQEIKDPRLKGFVTISAVKVAADLGHAKIYFTVLNED
CCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCC
KSVVTNILNGAASYLRSALARSITLRTVPQLHFIYDESIEYGQRLSRLIDEVNPPDSSSD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
DNN
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA