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The map label for this gene is scoP [H]

Identifier: 148360970

GI number: 148360970

Start: 504566

End: 505207

Strand: Direct

Name: scoP [H]

Synonym: LPC_2930

Alternate gene names: 148360970

Gene position: 504566-505207 (Clockwise)

Preceding gene: 148360971

Following gene: 148360969

Centisome position: 14.11

GC content: 36.45

Gene sequence:

>642_bases
ATGAACATAAAGATAAAAGGGGGCGCTGTAACAATCACTGTATTGGCCCTGGTCAGTTTATTAGCTGGTATTTATATCTC
TCAGAATTTTCATTTTAAAAAGAAGATCAATGTGGCGGATTTTCATGGGACTTATCTTGAAAATCCAAGAACAGTCAATA
ATTTTAGCTTAACAGGCACAGATCAGAAGGCTTTCAATAACTCAAGCTTGCAGGGGCGCTGGACTTTAGTATTTTTTGGA
TTTACCAATTGTGGTTATCTATGCCCGACTACCATGGCAGAGCTTGGAAAAATGTATCGAATTCTGGAAAAGAAAGGGGT
GAAAAATTTACCTCAAGTTGTGATGATATCTATTGATCCGCAAAGAGACAGTCTTGATAAATTGGGTAGTTATGTCACTT
CTTTCCATAAATCATTTTATGGTGCAAGAGGAGAAGAGGATTCAATTAAATCAATGACCCATGAAATGGGCATTGCTTAC
GCAAAAATAAACAATAAAGAGAGTTCGGAGCCTGAAAATTATGATATACAACATAGTGGGGCCGTAATGCTATTTAATCC
TCAAGGTGAGTTAAATGCATTTTTTACAACACCACATCATGCGGATCTCTTAGCTAAGGATTATGTCTTATTGGTATCTT
AA

Upstream 100 bases:

>100_bases
TAAACCAGTCGTTGCTATGCAAACATTCCGATTTTCTATTCTGTACCTAATGCTGTTGTTTGTCTTTTTATTAGTAGATC
ACTATTTTTAAGGGGTTAGA

Downstream 100 bases:

>100_bases
CCTGTAATTCGATATTTTACCTCTACAGGAGCAATGGCTAAGCAGACTTGTTTTATTTATGTCAAAGAAATCTATCTAGA
ATGCATTAGTTAATTAATTG

Product: SCO1/SenC family transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MNIKIKGGAVTITVLALVSLLAGIYISQNFHFKKKINVADFHGTYLENPRTVNNFSLTGTDQKAFNNSSLQGRWTLVFFG
FTNCGYLCPTTMAELGKMYRILEKKGVKNLPQVVMISIDPQRDSLDKLGSYVTSFHKSFYGARGEEDSIKSMTHEMGIAY
AKINNKESSEPENYDIQHSGAVMLFNPQGELNAFFTTPHHADLLAKDYVLLVS

Sequences:

>Translated_213_residues
MNIKIKGGAVTITVLALVSLLAGIYISQNFHFKKKINVADFHGTYLENPRTVNNFSLTGTDQKAFNNSSLQGRWTLVFFG
FTNCGYLCPTTMAELGKMYRILEKKGVKNLPQVVMISIDPQRDSLDKLGSYVTSFHKSFYGARGEEDSIKSMTHEMGIAY
AKINNKESSEPENYDIQHSGAVMLFNPQGELNAFFTTPHHADLLAKDYVLLVS
>Mature_213_residues
MNIKIKGGAVTITVLALVSLLAGIYISQNFHFKKKINVADFHGTYLENPRTVNNFSLTGTDQKAFNNSSLQGRWTLVFFG
FTNCGYLCPTTMAELGKMYRILEKKGVKNLPQVVMISIDPQRDSLDKLGSYVTSFHKSFYGARGEEDSIKSMTHEMGIAY
AKINNKESSEPENYDIQHSGAVMLFNPQGELNAFFTTPHHADLLAKDYVLLVS

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=144, Percent_Identity=30.5555555555556, Blast_Score=88, Evalue=5e-18,
Organism=Homo sapiens, GI281182722, Length=144, Percent_Identity=30.5555555555556, Blast_Score=88, Evalue=5e-18,
Organism=Homo sapiens, GI281182716, Length=144, Percent_Identity=30.5555555555556, Blast_Score=88, Evalue=5e-18,
Organism=Homo sapiens, GI153791313, Length=144, Percent_Identity=30.5555555555556, Blast_Score=88, Evalue=5e-18,
Organism=Homo sapiens, GI4759068, Length=195, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17531419, Length=156, Percent_Identity=25.6410256410256, Blast_Score=82, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6319498, Length=137, Percent_Identity=28.4671532846715, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6319511, Length=195, Percent_Identity=24.1025641025641, Blast_Score=71, Evalue=2e-13,
Organism=Drosophila melanogaster, GI19920710, Length=201, Percent_Identity=22.8855721393035, Blast_Score=70, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23787; Mature: 23787

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKIKGGAVTITVLALVSLLAGIYISQNFHFKKKINVADFHGTYLENPRTVNNFSLTGT
CEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCEEECCCCCCCCCCCCCCEEEECC
DQKAFNNSSLQGRWTLVFFGFTNCGYLCPTTMAELGKMYRILEKKGVKNLPQVVMISIDP
CHHHCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
QRDSLDKLGSYVTSFHKSFYGARGEEDSIKSMTHEMGIAYAKINNKESSEPENYDIQHSG
CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCEEEEEECCCCCCCCCCCCEECCC
AVMLFNPQGELNAFFTTPHHADLLAKDYVLLVS
EEEEECCCCCCEEEEECCCCHHHHHCCEEEEEC
>Mature Secondary Structure
MNIKIKGGAVTITVLALVSLLAGIYISQNFHFKKKINVADFHGTYLENPRTVNNFSLTGT
CEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCEEECCCCCCCCCCCCCCEEEECC
DQKAFNNSSLQGRWTLVFFGFTNCGYLCPTTMAELGKMYRILEKKGVKNLPQVVMISIDP
CHHHCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
QRDSLDKLGSYVTSFHKSFYGARGEEDSIKSMTHEMGIAYAKINNKESSEPENYDIQHSG
CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCEEEEEECCCCCCCCCCCCEECCC
AVMLFNPQGELNAFFTTPHHADLLAKDYVLLVS
EEEEECCCCCCEEEEECCCCHHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226670 [H]