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The map label for this gene is lig [H]

Identifier: 148360390

GI number: 148360390

Start: 1151541

End: 1153562

Strand: Direct

Name: lig [H]

Synonym: LPC_2329

Alternate gene names: 148360390

Gene position: 1151541-1153562 (Clockwise)

Preceding gene: 148360395

Following gene: 148360389

Centisome position: 32.2

GC content: 41.94

Gene sequence:

>2022_bases
ATGAATGATCAAGGAATTAAGGAATCGATAGAAACGCTTAAAGAGCAAATAAGAAAATACGATTATCACTATTATGTTTT
AGATGAACCTTTGGTTCCTGACGCGGAATATGATCGATGTTTCAAGGCATTGCAACAGTATGAAGAGCAATATCCGCAAT
TTTTATCGCCAGATTCTCCTACACAGAGAGTGAGCGGTACTCCTTCAGATGCTTTTATGCCGGTAGCCCATAAGCAAGCC
ATGTTGTCTTTGTCCAATGTGTTTACTACCGATGAATTAAAAGCATTCATTAAGCGAGCAATTGAGAAACTGGATGAACC
AAATCAACAACTGGTATTTGCTTGCGAACCAAAGCTTGATGGGTTGGCTGTTAACATGACTTATGAGGGCGGGATCTTGA
CTCATGCCGCAACTCGTGGCGATGGTGCTGTAGGTGAAAACATCACAGCAAATATTAAGACTATTGCTTCAGTTCCATTA
AGGCTAAGGGTTAGTAACCCTCCAAAATTGATCGAAGTGCGGGGTGAAGTCTATATCCCCAAAGCCGATTTTGAAGCATA
CAACGCAAGGGCTAGAGAACTCGGTGAAAAAACTTTTGCTAATCCGCGAAATGCTGCTGCAGGCAGTTTAAGGCAATTAA
ATCCTGAAATTTCTGCCAGTCGTCCACTTGCTATTTATTGTTATGGTATAGGGGCTTGCGAGGATTATAAGTTACCTAAC
AGTCATTTGGAGCAATTGAATTTATTAAAAGAGTTTGGATTTAGAGTGTCTCCAGAAACGAGGAGGGCGGTTGGAGTAGA
AGGCTGTTTAGATTATTACCAGTATATGTTAGCGAAACGGAATCAATTGCCATTTGAAATAGATGGGGTTGTTTATAAGA
TTGACAGTATCTCCTTGCAACAGCAATTAGGTTATGTTTCTCGTGCCCCAAGATTTGCTTGTGCCCATAAATTTCCCGCT
ACAGAAGAAATGACTCGCCTGATAGCCGTGGATTTCCAGGTGGGTAGAACGGGCGCTGTGACGCCGGTTGCACGTTTGGA
GCCAGTTAGTGTTGGTGGTGTTACAGTAAGTAATGCGACTTTGCATAATTTTGATGAAATTACCCGAAAAGACATTCATA
TTGGTGATACGGTTATTATTCGTCGCGCTGGTGACGTGATCCCTGAAGTGGTTTCTGTGATTTTGGAAAAGCGTCCCGCT
AATGCCAGAAAGATTGAGCTTCCTAAAAATTGCCCTGTTTGTGGTTCTGAAGTCGTAAGGGAAGCGGATGAAGCAATTGC
TCGTTGTGTCGGCGGTTTATATTGTAAAGCACAATTAAAAAGGATGATGTGGCATTTTGCTTCTCGAAAAGCGATGTATA
TTGAAGGACTTGGCAGTGTTTTAATTGATCAGTTAGTTGATGAGGGTATTGTCCATCATTTGGCGGATCTTTATGAACTC
GATTTGCAGACTTTAGCTAACCTGCCAAGGATGGGGGAGAAATCTGCAAAAAACCTATTATCCGCTTTGGAAAAAAGTAA
AAAGACTACTTTCAATCGCTTTCTTTATGCTTTGGGGATCAGAGAAATCGGTGAAGCCGGCGCAAGGGTTTTAGCGGAGC
ACTACTGCGATGTAGAGAGCTTGAAAGCGGCAACGATTGAGGAATTAATGACTCTGAATGATATAGGTCCAGTAGCGGCT
TCTCATATAGTCCATTTCTTTGCCCAAGCGCATAATCTTGAAGTGATTGACCGTCTTCTCGAGTTGGGCATTCATTGGCC
TAAGCCCGAAAAAATACAGGTTAATCAGCAAAATCCATTTTTTGGTAAAACAGTAGTTTTAACTGGAACTCTGAGTACCA
TGGGGAGGGAAGAGGCAAAGGCAAAATTATTAGCCTTAGGCGCAAAAGTGAGTGGAAGTGTGTCTTCCAAAACGGATTAT
TTAGTAGCAGGAAGTGAAGCCGGTTCAAAGCTGGTTAAAGCGACAGAACTGGGTGTAGCGATTATAGAGGAAGACGAGTT
TTTAAAATGGGTTAATTCATGA

Upstream 100 bases:

>100_bases
GCTTCCAAAAAAAGATTTTGCCTTGAATGATTAAACCATTCATATTTGAAAGAAGTAAAAAAATGATAAACTGTTGTTTT
TATTTTGGGAATCTTCATTA

Downstream 100 bases:

>100_bases
GTAGCTAGATCTTTGTTATTTGGTTTATGATGGGTATCAATGAATCGGGTGAAGTAGGTATTTAAACCTGTAATAATGAC
TGATTGGCACGAGGGAAGTA

Product: DNA ligase

Products: NA

Alternate protein names: Polydeoxyribonucleotide synthase [NAD+] [H]

Number of amino acids: Translated: 673; Mature: 673

Protein sequence:

>673_residues
MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSPTQRVSGTPSDAFMPVAHKQA
MLSLSNVFTTDELKAFIKRAIEKLDEPNQQLVFACEPKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPL
RLRVSNPPKLIEVRGEVYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPN
SHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQQQLGYVSRAPRFACAHKFPA
TEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNATLHNFDEITRKDIHIGDTVIIRRAGDVIPEVVSVILEKRPA
NARKIELPKNCPVCGSEVVREADEAIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLIDQLVDEGIVHHLADLYEL
DLQTLANLPRMGEKSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLNDIGPVAA
SHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEAKAKLLALGAKVSGSVSSKTDY
LVAGSEAGSKLVKATELGVAIIEEDEFLKWVNS

Sequences:

>Translated_673_residues
MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSPTQRVSGTPSDAFMPVAHKQA
MLSLSNVFTTDELKAFIKRAIEKLDEPNQQLVFACEPKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPL
RLRVSNPPKLIEVRGEVYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPN
SHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQQQLGYVSRAPRFACAHKFPA
TEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNATLHNFDEITRKDIHIGDTVIIRRAGDVIPEVVSVILEKRPA
NARKIELPKNCPVCGSEVVREADEAIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLIDQLVDEGIVHHLADLYEL
DLQTLANLPRMGEKSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLNDIGPVAA
SHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEAKAKLLALGAKVSGSVSSKTDY
LVAGSEAGSKLVKATELGVAIIEEDEFLKWVNS
>Mature_673_residues
MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSPTQRVSGTPSDAFMPVAHKQA
MLSLSNVFTTDELKAFIKRAIEKLDEPNQQLVFACEPKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPL
RLRVSNPPKLIEVRGEVYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPN
SHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQQQLGYVSRAPRFACAHKFPA
TEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNATLHNFDEITRKDIHIGDTVIIRRAGDVIPEVVSVILEKRPA
NARKIELPKNCPVCGSEVVREADEAIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLIDQLVDEGIVHHLADLYEL
DLQTLANLPRMGEKSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLNDIGPVAA
SHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEAKAKLLALGAKVSGSVSSKTDY
LVAGSEAGSKLVKATELGVAIIEEDEFLKWVNS

Specific function: DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of dam

COG id: COG0272

COG function: function code L; NAD-dependent DNA ligase (contains BRCT domain type II)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BRCT domain [H]

Homologues:

Organism=Escherichia coli, GI1788750, Length=671, Percent_Identity=53.204172876304, Blast_Score=725, Evalue=0.0,
Organism=Escherichia coli, GI87082305, Length=526, Percent_Identity=23.0038022813688, Blast_Score=118, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001357
- InterPro:   IPR018239
- InterPro:   IPR004150
- InterPro:   IPR001679
- InterPro:   IPR013839
- InterPro:   IPR013840
- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR010994
- InterPro:   IPR004149 [H]

Pfam domain/function: PF00533 BRCT; PF01653 DNA_ligase_aden; PF03120 DNA_ligase_OB; PF03119 DNA_ligase_ZBD [H]

EC number: =6.5.1.2 [H]

Molecular weight: Translated: 74601; Mature: 74601

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS50172 BRCT ; PS01055 DNA_LIGASE_N1 ; PS01056 DNA_LIGASE_N2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSP
CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCCC
TQRVSGTPSDAFMPVAHKQAMLSLSNVFTTDELKAFIKRAIEKLDEPNQQLVFACEPKLD
CHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
GLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIP
CEEEEEEECCCEEEEECCCCCCCCCCCCEECHHHHCCCCEEEEECCCCCEEEECCCEEEC
KADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPN
CCCCHHHHHHHHHHHHHHCCCCCCHHHCHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCH
SHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQ
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEEECCHHHH
QQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNAT
HHHHHHHCCCCHHHHCCCCCHHHHHHHHHEEEEECCCCCCCCHHHCCCEEECCEEECCCC
LHNFDEITRKDIHIGDTVIIRRAGDVIPEVVSVILEKRPANARKIELPKNCPVCGSEVVR
HHCHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHH
EADEAIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLIDQLVDEGIVHHLADLYEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLQTLANLPRMGEKSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVES
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LKAATIEELMTLNDIGPVAASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEECCCCCC
FGKTVVLTGTLSTMGREEAKAKLLALGAKVSGSVSSKTDYLVAGSEAGSKLVKATELGVA
CCCEEEEEECHHHHCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCEE
IIEEDEFLKWVNS
EECCHHHHHHHCC
>Mature Secondary Structure
MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSP
CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCCC
TQRVSGTPSDAFMPVAHKQAMLSLSNVFTTDELKAFIKRAIEKLDEPNQQLVFACEPKLD
CHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
GLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIP
CEEEEEEECCCEEEEECCCCCCCCCCCCEECHHHHCCCCEEEEECCCCCEEEECCCEEEC
KADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPN
CCCCHHHHHHHHHHHHHHCCCCCCHHHCHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCH
SHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQ
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEEECCHHHH
QQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNAT
HHHHHHHCCCCHHHHCCCCCHHHHHHHHHEEEEECCCCCCCCHHHCCCEEECCEEECCCC
LHNFDEITRKDIHIGDTVIIRRAGDVIPEVVSVILEKRPANARKIELPKNCPVCGSEVVR
HHCHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHH
EADEAIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLIDQLVDEGIVHHLADLYEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLQTLANLPRMGEKSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVES
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LKAATIEELMTLNDIGPVAASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEECCCCCC
FGKTVVLTGTLSTMGREEAKAKLLALGAKVSGSVSSKTDYLVAGSEAGSKLVKATELGVA
CCCEEEEEECHHHHCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCEE
IIEEDEFLKWVNS
EECCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA