Click here to switch to the map view.

The map label for this gene is sdbB

Identifier: 148360065

GI number: 148360065

Start: 2972319

End: 2973665

Strand: Direct

Name: sdbB

Synonym: LPC_1996

Alternate gene names: NA

Gene position: 2972319-2973665 (Clockwise)

Preceding gene: 148360068

Following gene: 148360063

Centisome position: 83.11

GC content: 38.98

Gene sequence:

>1347_bases
ATGGCCAAAACTATTACAAAAGACAGTTTTTTTCATAGTCGTTTACAACAATTTGTAGCTAATTCCCTTTTTCCAGCAGG
GGCCGGTGATTGGTATAAAAACAAAGGCTACGGAAAAAAGGGCGAAGTTGATGACGAAGCTCCTTTTAGAGATTTCGTTG
AAAAACAAAAAACCGATAAAAAATCACACTATTATAAAGAGTTTCAAGGCCTGGATTTAAGTCTGAAGAAAGTGAAAACA
AAGCTGGTTTCTGGTGAATCATGTCAGTTAGAAGTCATGAAATGCCAACCAGAATCAAATGAGCCTAAAAAGCCTGGCAC
TGGGAAACATATTGTCTATTTTCCCGGAGCGAATACTTACTACCAAGCCTGTTTTCGCGATATCAGCACGGCTTGCAAAG
AAACTGGAGCAACTGTACACGCTTTTAATTTCCCAGGGACAGGCCTCAGTTCAGGAAAGGTGAGAGAGGCGAATGACTTA
ATCAATGCTGGTCTTTCTGTGGTTTCCTCTTTAATTAAACAAGGGGTGCACCCGGACGACATCATTTTACAGGGGGATTG
CTACGGAGCTAGCATTGCATTAGAGGTAAAAAGGCAATTAGAAGAGCAAGCGGACATCAAAGTTCGTGCGATCATGAACA
ATGTTTTCAAGTCATTTAAAGCAGCCGTTTGCGATATGATTACCCAATCACCATGGCTACCTAACATATTAAAAAGCATT
GTTAAAAGATTGTTAGAATTTACCGGCTGGCATGTTACTCCAGGAAAAAAATATAAACATGCTGATCCTTACCAATGTCA
TATTCAACACTTGGGAGATCAAACATTAGAATCTTCGACATTATCAAGTAAAGTCAGCAAATATCAACATGAAATACAAA
CTGGGCAAACCAAATCTCAAAAAAGGGCTCCCATTACGGATACCTGTCCGGAAGAGTATCGAAAAGATCGTGATGAGCTG
GATAGAAAACATTATGTTCGAGTCAAGGAAACCGCTAAAGAACGCCTTGCTTCCAAATTTGGAGTCGATAAATTTGGAAG
GGTCAATGCTCACTTTGCTGATTTGTGTGAGCTGGAAATGTTGGATGGGCAATCGGTATATCAAGGTTTTGTCAATGACT
ATATTGCCAGATCGAATGCTTACATAGAAAAACATCCCCAAAAAGGTATTAAAGACATTCAACAGGATTTAAGTCAATTA
CATTACTTACAAGCAGCCGATTCAATAGAGATTACTGAAGATGAGGCTCAGGATTTTAACACGGTAGTTGATCTTATTAC
GGATGAACAACAACTAAGGCATGATCGATTCAACGATAATACAATAGGTAAAAGCATCTCTATGTAA

Upstream 100 bases:

>100_bases
CCGAATGTACTTTATTAATACTCTCTTAAGTTTTTTCTGCTAAATTTATGCTAAATTTAAAAAATATACTGACTTTATTT
TGCTCACACTGGGGAATTAA

Downstream 100 bases:

>100_bases
TTGCAAGTACTGACTGGCAGGACTATTCAGCTTTTGCCAGTCAGTTGCCTCGAACAAAATCCTTGTGCTTCAACGCCAAG
GGCACTATTAAATTTACTGG

Product: Dot/Icm system substrate protein SdbB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 447

Protein sequence:

>448_residues
MAKTITKDSFFHSRLQQFVANSLFPAGAGDWYKNKGYGKKGEVDDEAPFRDFVEKQKTDKKSHYYKEFQGLDLSLKKVKT
KLVSGESCQLEVMKCQPESNEPKKPGTGKHIVYFPGANTYYQACFRDISTACKETGATVHAFNFPGTGLSSGKVREANDL
INAGLSVVSSLIKQGVHPDDIILQGDCYGASIALEVKRQLEEQADIKVRAIMNNVFKSFKAAVCDMITQSPWLPNILKSI
VKRLLEFTGWHVTPGKKYKHADPYQCHIQHLGDQTLESSTLSSKVSKYQHEIQTGQTKSQKRAPITDTCPEEYRKDRDEL
DRKHYVRVKETAKERLASKFGVDKFGRVNAHFADLCELEMLDGQSVYQGFVNDYIARSNAYIEKHPQKGIKDIQQDLSQL
HYLQAADSIEITEDEAQDFNTVVDLITDEQQLRHDRFNDNTIGKSISM

Sequences:

>Translated_448_residues
MAKTITKDSFFHSRLQQFVANSLFPAGAGDWYKNKGYGKKGEVDDEAPFRDFVEKQKTDKKSHYYKEFQGLDLSLKKVKT
KLVSGESCQLEVMKCQPESNEPKKPGTGKHIVYFPGANTYYQACFRDISTACKETGATVHAFNFPGTGLSSGKVREANDL
INAGLSVVSSLIKQGVHPDDIILQGDCYGASIALEVKRQLEEQADIKVRAIMNNVFKSFKAAVCDMITQSPWLPNILKSI
VKRLLEFTGWHVTPGKKYKHADPYQCHIQHLGDQTLESSTLSSKVSKYQHEIQTGQTKSQKRAPITDTCPEEYRKDRDEL
DRKHYVRVKETAKERLASKFGVDKFGRVNAHFADLCELEMLDGQSVYQGFVNDYIARSNAYIEKHPQKGIKDIQQDLSQL
HYLQAADSIEITEDEAQDFNTVVDLITDEQQLRHDRFNDNTIGKSISM
>Mature_447_residues
AKTITKDSFFHSRLQQFVANSLFPAGAGDWYKNKGYGKKGEVDDEAPFRDFVEKQKTDKKSHYYKEFQGLDLSLKKVKTK
LVSGESCQLEVMKCQPESNEPKKPGTGKHIVYFPGANTYYQACFRDISTACKETGATVHAFNFPGTGLSSGKVREANDLI
NAGLSVVSSLIKQGVHPDDIILQGDCYGASIALEVKRQLEEQADIKVRAIMNNVFKSFKAAVCDMITQSPWLPNILKSIV
KRLLEFTGWHVTPGKKYKHADPYQCHIQHLGDQTLESSTLSSKVSKYQHEIQTGQTKSQKRAPITDTCPEEYRKDRDELD
RKHYVRVKETAKERLASKFGVDKFGRVNAHFADLCELEMLDGQSVYQGFVNDYIARSNAYIEKHPQKGIKDIQQDLSQLH
YLQAADSIEITEDEAQDFNTVVDLITDEQQLRHDRFNDNTIGKSISM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50700; Mature: 50568

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKTITKDSFFHSRLQQFVANSLFPAGAGDWYKNKGYGKKGEVDDEAPFRDFVEKQKTDK
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCH
KSHYYKEFQGLDLSLKKVKTKLVSGESCQLEVMKCQPESNEPKKPGTGKHIVYFPGANTY
HHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCHH
YQACFRDISTACKETGATVHAFNFPGTGLSSGKVREANDLINAGLSVVSSLIKQGVHPDD
HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
IILQGDCYGASIALEVKRQLEEQADIKVRAIMNNVFKSFKAAVCDMITQSPWLPNILKSI
EEEECCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
VKRLLEFTGWHVTPGKKYKHADPYQCHIQHLGDQTLESSTLSSKVSKYQHEIQTGQTKSQ
HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KRAPITDTCPEEYRKDRDELDRKHYVRVKETAKERLASKFGVDKFGRVNAHFADLCELEM
CCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
LDGQSVYQGFVNDYIARSNAYIEKHPQKGIKDIQQDLSQLHYLQAADSIEITEDEAQDFN
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHH
TVVDLITDEQQLRHDRFNDNTIGKSISM
HHHHHHCCHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AKTITKDSFFHSRLQQFVANSLFPAGAGDWYKNKGYGKKGEVDDEAPFRDFVEKQKTDK
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCH
KSHYYKEFQGLDLSLKKVKTKLVSGESCQLEVMKCQPESNEPKKPGTGKHIVYFPGANTY
HHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCHH
YQACFRDISTACKETGATVHAFNFPGTGLSSGKVREANDLINAGLSVVSSLIKQGVHPDD
HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
IILQGDCYGASIALEVKRQLEEQADIKVRAIMNNVFKSFKAAVCDMITQSPWLPNILKSI
EEEECCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
VKRLLEFTGWHVTPGKKYKHADPYQCHIQHLGDQTLESSTLSSKVSKYQHEIQTGQTKSQ
HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KRAPITDTCPEEYRKDRDELDRKHYVRVKETAKERLASKFGVDKFGRVNAHFADLCELEM
CCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
LDGQSVYQGFVNDYIARSNAYIEKHPQKGIKDIQQDLSQLHYLQAADSIEITEDEAQDFN
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHH
TVVDLITDEQQLRHDRFNDNTIGKSISM
HHHHHHCCHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA