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The map label for this gene is 148360055

Identifier: 148360055

GI number: 148360055

Start: 2984913

End: 2985353

Strand: Reverse

Name: 148360055

Synonym: LPC_1986

Alternate gene names: NA

Gene position: 2985353-2984913 (Counterclockwise)

Preceding gene: 148360054

Following gene: 148360059

Centisome position: 83.47

GC content: 36.28

Gene sequence:

>441_bases
ATGCATTTGCATATCACCTTGCAATTTTTACAGAGACTGGAAACAGAACATATTCAGGTCTTGATTGAAAGAGTAAGTAA
TGAACTTAACCATATAAAGCAATTTGATTTGGAGTTCGGTGTTTTAGAGTGGTTCCCTTCTCCCAAAAATCCAAGACTTA
TTTCATTATCGGTAGATCCTCAAGACAGACTTAGGGATTGGTCTCGAATGATTGGTCAGGTGATGGACAGTTTAAAGTAT
CCTTTAGAAAAACGTCCTTTTAGGGGGCATTTGACTGTAGGTAGAGTTGTGAATTTCAGCCCAAAACTTCAGCAGTTATT
GCAAATGAAATTTCCTCTCATTCCACCAGTTCCCATTAATAAATTTTATTTAATTGAAAGTAGGCCTGATAAAGAAGGAA
GTAATTATTTTCCCTTGGCGCAATTTGATTTAACCCGGTAA

Upstream 100 bases:

>100_bases
TGCTATTTCACTACCACCGGAGATCCAGGACAATATCCGGGGTAATTTGGAGCCATTGAGGCAAATGGCGCCAGTTCACT
CCATAAGGTGGACAAAGCCA

Downstream 100 bases:

>100_bases
AAGAGAATGGCTGATTTGCCAATTGGAACGATTCTTTGTCTCTGTGTACAATTTATTATGCTCAAGTGTCTTTATTATTT
GGCATAGGATGAATTTAAGC

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: 2-5' RNA Ligase

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MHLHITLQFLQRLETEHIQVLIERVSNELNHIKQFDLEFGVLEWFPSPKNPRLISLSVDPQDRLRDWSRMIGQVMDSLKY
PLEKRPFRGHLTVGRVVNFSPKLQQLLQMKFPLIPPVPINKFYLIESRPDKEGSNYFPLAQFDLTR

Sequences:

>Translated_146_residues
MHLHITLQFLQRLETEHIQVLIERVSNELNHIKQFDLEFGVLEWFPSPKNPRLISLSVDPQDRLRDWSRMIGQVMDSLKY
PLEKRPFRGHLTVGRVVNFSPKLQQLLQMKFPLIPPVPINKFYLIESRPDKEGSNYFPLAQFDLTR
>Mature_146_residues
MHLHITLQFLQRLETEHIQVLIERVSNELNHIKQFDLEFGVLEWFPSPKNPRLISLSVDPQDRLRDWSRMIGQVMDSLKY
PLEKRPFRGHLTVGRVVNFSPKLQQLLQMKFPLIPPVPINKFYLIESRPDKEGSNYFPLAQFDLTR

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17334; Mature: 17334

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLHITLQFLQRLETEHIQVLIERVSNELNHIKQFDLEFGVLEWFPSPKNPRLISLSVDP
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEECCCCCCCEEEEEECCC
QDRLRDWSRMIGQVMDSLKYPLEKRPFRGHLTVGRVVNFSPKLQQLLQMKFPLIPPVPIN
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCEECCCHHHHHHHHHHCCCCCCCCCC
KFYLIESRPDKEGSNYFPLAQFDLTR
EEEEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHLHITLQFLQRLETEHIQVLIERVSNELNHIKQFDLEFGVLEWFPSPKNPRLISLSVDP
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEECCCCCCCEEEEEECCC
QDRLRDWSRMIGQVMDSLKYPLEKRPFRGHLTVGRVVNFSPKLQQLLQMKFPLIPPVPIN
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCEECCCHHHHHHHHHHCCCCCCCCCC
KFYLIESRPDKEGSNYFPLAQFDLTR
EEEEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA