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The map label for this gene is araC [C]

Identifier: 148359987

GI number: 148359987

Start: 3053991

End: 3054746

Strand: Reverse

Name: araC [C]

Synonym: LPC_1917

Alternate gene names: 148359987

Gene position: 3054746-3053991 (Counterclockwise)

Preceding gene: 148359986

Following gene: 148359988

Centisome position: 85.41

GC content: 38.62

Gene sequence:

>756_bases
ATGTTGCTGACTAATCGTATTGATCTTCGTTCTTACCATACTGAAAGTTGCAGTCACACTCACGATTTTGCGCAATTGGT
ACTGCCCGTCTCGGGTTCTATGGAGCTGGAGGTAGGTCACTACTCCGGTGTCGTTAATGATGATATCGGAGTATACATTG
CGCCTAATGAACAACATTGTTTTGCCGGAAGCCAAAAAAATCTGTTTTTAGTGATTGATGCAACTACTCAAAACTCTCTT
CGTGACGAGGCTTTTGAATCTAATATTCTCAATTTAACCGCCAGTACTAAAAAGCTCATCCAATTTACCCACCATTATTT
AGCACATAATGAAAGGGATTTTTTTACAGACTCTTTAATCAATCAATTATTGTTTCACTTTGCGGCAAGTTCTTTTTCAC
CCGAACCGGATCCGCTTGTTATCAGAGCAAAACAATGGATTGATCTTTATTTTGCAGATTCTGTGGATGTGAGCAGGGTA
GCGAAACATTGTTATTTGAGCATTAGTCAATTGCAGCGCCGTTTTAAGCAGATGTTAGGCTGTGGTATTGCCGAATATTG
GCGGATGAAAAAATTACTCCATGCTAAAAAATTATTATCTCAGAAAAATTGTTCCATTGAAGCAATCGCATTTGAAGTAG
GTTATGAAAACTTGCCCGCATTCAGTCGCCGTTTTAGTAAAGTATTCGGTGAATCTGCATCTCAATGGAGAACCAAAGCG
TTAACAGCAAAGAAAATGCGTGAAATAGATAAATAA

Upstream 100 bases:

>100_bases
TCAAGCTAATCCAAAGTTTCGGCTACCTCTCTCAATGGGTTTCAAATCAAGTATGATATAATCTGTTTCTTTTAAAGGTA
AATGTTCGCTCGGGAGCAAT

Downstream 100 bases:

>100_bases
GCTCTGGTTTTAAATTGATAGACTACGAATTCATTTGGTGGTAACGATACAGCCTATATAAAACATTGAGGTGCAACATG
ACGATATCTTATGAAGAATT

Product: AraC-family transporter transcriptional regulator

Products: NA

Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator; Transcription Regulator Protein; Trancriptional Regulator AraC Family; Transcriptional Regulator AraC Family; Transcriptional Regulator AraC/XylS Family; Proline Utilization Regulator; Arac-Type Transcription Regulator

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MLLTNRIDLRSYHTESCSHTHDFAQLVLPVSGSMELEVGHYSGVVNDDIGVYIAPNEQHCFAGSQKNLFLVIDATTQNSL
RDEAFESNILNLTASTKKLIQFTHHYLAHNERDFFTDSLINQLLFHFAASSFSPEPDPLVIRAKQWIDLYFADSVDVSRV
AKHCYLSISQLQRRFKQMLGCGIAEYWRMKKLLHAKKLLSQKNCSIEAIAFEVGYENLPAFSRRFSKVFGESASQWRTKA
LTAKKMREIDK

Sequences:

>Translated_251_residues
MLLTNRIDLRSYHTESCSHTHDFAQLVLPVSGSMELEVGHYSGVVNDDIGVYIAPNEQHCFAGSQKNLFLVIDATTQNSL
RDEAFESNILNLTASTKKLIQFTHHYLAHNERDFFTDSLINQLLFHFAASSFSPEPDPLVIRAKQWIDLYFADSVDVSRV
AKHCYLSISQLQRRFKQMLGCGIAEYWRMKKLLHAKKLLSQKNCSIEAIAFEVGYENLPAFSRRFSKVFGESASQWRTKA
LTAKKMREIDK
>Mature_251_residues
MLLTNRIDLRSYHTESCSHTHDFAQLVLPVSGSMELEVGHYSGVVNDDIGVYIAPNEQHCFAGSQKNLFLVIDATTQNSL
RDEAFESNILNLTASTKKLIQFTHHYLAHNERDFFTDSLINQLLFHFAASSFSPEPDPLVIRAKQWIDLYFADSVDVSRV
AKHCYLSISQLQRRFKQMLGCGIAEYWRMKKLLHAKKLLSQKNCSIEAIAFEVGYENLPAFSRRFSKVFGESASQWRTKA
LTAKKMREIDK

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786251, Length=125, Percent_Identity=34.4, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28743; Mature: 28743

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLTNRIDLRSYHTESCSHTHDFAQLVLPVSGSMELEVGHYSGVVNDDIGVYIAPNEQHC
CCCCCCCCHHHHCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCEECCCCEEEEECCCCEE
FAGSQKNLFLVIDATTQNSLRDEAFESNILNLTASTKKLIQFTHHYLAHNERDFFTDSLI
CCCCCCCEEEEEECCCCCHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHCCCCHHHHHHHH
NQLLFHFAASSFSPEPDPLVIRAKQWIDLYFADSVDVSRVAKHCYLSISQLQRRFKQMLG
HHHHHHHHHHCCCCCCCCEEEEEEHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC
CGIAEYWRMKKLLHAKKLLSQKNCSIEAIAFEVGYENLPAFSRRFSKVFGESASQWRTKA
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHH
LTAKKMREIDK
HHHHHHHHCCC
>Mature Secondary Structure
MLLTNRIDLRSYHTESCSHTHDFAQLVLPVSGSMELEVGHYSGVVNDDIGVYIAPNEQHC
CCCCCCCCHHHHCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCEECCCCEEEEECCCCEE
FAGSQKNLFLVIDATTQNSLRDEAFESNILNLTASTKKLIQFTHHYLAHNERDFFTDSLI
CCCCCCCEEEEEECCCCCHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHCCCCHHHHHHHH
NQLLFHFAASSFSPEPDPLVIRAKQWIDLYFADSVDVSRVAKHCYLSISQLQRRFKQMLG
HHHHHHHHHHCCCCCCCCEEEEEEHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC
CGIAEYWRMKKLLHAKKLLSQKNCSIEAIAFEVGYENLPAFSRRFSKVFGESASQWRTKA
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHH
LTAKKMREIDK
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA