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The map label for this gene is rlpA [H]

Identifier: 148359979

GI number: 148359979

Start: 3061974

End: 3062408

Strand: Direct

Name: rlpA [H]

Synonym: LPC_1909

Alternate gene names: 148359979

Gene position: 3061974-3062408 (Clockwise)

Preceding gene: 148359980

Following gene: 148359976

Centisome position: 85.61

GC content: 42.07

Gene sequence:

>435_bases
ATGAATTATTATTCGATTTTGTTGACCATTAAACGACTCATTATAGGTTTACTCCCCATACTACTGGTTGCTTGTGCGCA
TAAGCAATCTCATGGTCCGGATCACTATGTGGTCAGAGGGAAAACATATCATGTGATGAAGTCTGCCAAACACTACAAAG
CAAAAGGAATTGCTTCCTGGTATGGGTCACACGCTCGGCATCAAAAAACATCGACCGGAGAGCGCTACAACATGTATGCG
ATGACAGCCGCTCATCCAACACTTCCAATTGCTACACGAGTACGGGTCAAAAACCTGAATAATGGCCGATCGGTTGTGGT
TCGAATTAATGATCGAGGTCCTTTTTTATCAAACAGGCTAATTGATTTATCCTTTGCTGCCGCTAAAAAACTCGGTATAA
AAGGTATTGCTCCTGTTGAAATTGAAGTCGTTTGA

Upstream 100 bases:

>100_bases
GTTGCCTATTGACGATTTTCTTTGCAAGAAATATCTTTGCTTCTCGTGATCTATGAATTACGTATATTTAAAATCTGTAG
CGGAAGTAGAAGATAACTTT

Downstream 100 bases:

>100_bases
AAATGCTAAGAAGTAAAGCTTGCTCAAGCTAACAACCTGATTAACTTATTAAATAATCTAAAATTAAGAAATCGTCCTAT
TCATCAATGAATTTCGTACT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MNYYSILLTIKRLIIGLLPILLVACAHKQSHGPDHYVVRGKTYHVMKSAKHYKAKGIASWYGSHARHQKTSTGERYNMYA
MTAAHPTLPIATRVRVKNLNNGRSVVVRINDRGPFLSNRLIDLSFAAAKKLGIKGIAPVEIEVV

Sequences:

>Translated_144_residues
MNYYSILLTIKRLIIGLLPILLVACAHKQSHGPDHYVVRGKTYHVMKSAKHYKAKGIASWYGSHARHQKTSTGERYNMYA
MTAAHPTLPIATRVRVKNLNNGRSVVVRINDRGPFLSNRLIDLSFAAAKKLGIKGIAPVEIEVV
>Mature_144_residues
MNYYSILLTIKRLIIGLLPILLVACAHKQSHGPDHYVVRGKTYHVMKSAKHYKAKGIASWYGSHARHQKTSTGERYNMYA
MTAAHPTLPIATRVRVKNLNNGRSVVVRINDRGPFLSNRLIDLSFAAAKKLGIKGIAPVEIEVV

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=110, Percent_Identity=40, Blast_Score=94, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 16075; Mature: 16075

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYYSILLTIKRLIIGLLPILLVACAHKQSHGPDHYVVRGKTYHVMKSAKHYKAKGIASW
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEHHHHHHHHHCCHHHH
YGSHARHQKTSTGERYNMYAMTAAHPTLPIATRVRVKNLNNGRSVVVRINDRGPFLSNRL
HCCHHHCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCE
IDLSFAAAKKLGIKGIAPVEIEVV
EEEHHHHHHHCCCCCCCCEEEEEC
>Mature Secondary Structure
MNYYSILLTIKRLIIGLLPILLVACAHKQSHGPDHYVVRGKTYHVMKSAKHYKAKGIASW
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEHHHHHHHHHCCHHHH
YGSHARHQKTSTGERYNMYAMTAAHPTLPIATRVRVKNLNNGRSVVVRINDRGPFLSNRL
HCCHHHCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCE
IDLSFAAAKKLGIKGIAPVEIEVV
EEEHHHHHHHCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]