Click here to switch to the map view.

The map label for this gene is ykfC [H]

Identifier: 148359921

GI number: 148359921

Start: 2799252

End: 2800616

Strand: Reverse

Name: ykfC [H]

Synonym: LPC_1850

Alternate gene names: 148359921

Gene position: 2800616-2799252 (Counterclockwise)

Preceding gene: 148359928

Following gene: 148359920

Centisome position: 78.31

GC content: 45.27

Gene sequence:

>1365_bases
ATGCACTGGGGCGGAGCAACTCGTATTAGTGTTGAAGTCACTGTAATGGTGATGGAGCGAAGGGGTTGCGTTAAGTCGTT
AGCATTAATGTACAACTGGAAACAGGATGACATATTAGTGACAATAAAACCATTTAACATACCAAAGCAACTGGTCTGGC
AGGCTTATAAATTGGTGCGAGCTAATGCTGGCTCTGCTGGTATTGATAATCAATCCATTGATGAGTTTAGCCAAGACCTC
AAGGGCAACTTGTATAAGCTATGGAATCGCATGAGTTCAGGAAGCTACTTCCCGCCAGCAGTGAAAGAAGTGGCTATTCC
CAAGAAGCAAGGCGGTGTGAGGAAATTAGGCATACCCACAGTAGCGGACAGAATTGCGCAGATGACGGTGAAATTAATGA
TGGAGCCGCTGCTTGAACCGCATTTTCTGGATGATTCTTATGGGTACAGGCCTAATAAATCGGCGCTTGATGCGGTAGGT
GTTACAAGAAAACGGTGTTGGGAATATGACTGGGTAGTTGAATTTGACATCAAAGGACTGTTCGATAACCTATCCCATGA
GCTTCTCATGAAAGCCGTCAAACATCACATCAGCGATAGATGGATATTGTTGTATGTGGAAAGATGGCTGACTGCGCCAA
TTCAGGATCAACATGGAGGATGCCTGCCAAGAACGGCGGGCACGCCTCAGGGCGGTGTAATCAGTCCCTTATTGAGTAAT
CTGTTTTTGCATTATGCTTTTGATCATTGGATGACAAAGCATCACCCGGATAATCCGTGGTGTCGGTATGCCGATGATGG
GCTTGCCCATTGCCGGACAGAGAAAGAAGCGGAGCAGATGCTCAAAGAGATTGACAAACGGTTTAAGTCTCTTGGTCTTG
AAATCCATCCAGATAAGACAAAGATTGTCTACTGCAAAGACGGGGCGCGGAAAGGAAAATATAAAAATAAATCATTCGAC
TTTCTGGGCTATACGTTTAAAGCGAGACGAGTCAAAGTCAGGTCAAGGAACAGTTTCTTCATTGGTTTCACACCAGTGGT
ATCACTAAAGGCGGTGAAGGCAATGACATTGAAGCTGCGGAGAGGAAACTGGCGAAATAACACCTCCTTGAGTCTTCAAG
AACTGGCTGACTTCATCAACCCGATGCTTAGGGGATGGCTTGCGTATTACGGTAAATATTCACGCTCCTCGATGTATCGA
GTTTGGCGATGCGTCAATAACATGTTGTTGGCCTGGGCAAAGAAGAAGTATAAAACATTGGGCAGAAGCAGAACCAAAGC
AGGCAAATTAATGGAACGAATCCATAAAGAAATGCCTGCGCTTTTTGTCCATTGGCGCAAAGGTATGTTCGGTGCGTTGA
CTTAA

Upstream 100 bases:

>100_bases
AGTCTGTTTCGGGCTTTTCTATGGAACTGCGGGAACCAGTGTATTGATGTAAAAGGAAAGGTCAAATTGCCAAAACAATG
AGGCTGACAGTACTGATGCA

Downstream 100 bases:

>100_bases
TGGGAGCCGGATGATGCGAGAGTATCACGTCCGGTTCTGCGAGCGGCCGAGGGGGAAGTTCCCTTGGTCGACTCACCAAA
TTTAGGTGTCATTCATAAAA

Product: reverse transcriptase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MHWGGATRISVEVTVMVMERRGCVKSLALMYNWKQDDILVTIKPFNIPKQLVWQAYKLVRANAGSAGIDNQSIDEFSQDL
KGNLYKLWNRMSSGSYFPPAVKEVAIPKKQGGVRKLGIPTVADRIAQMTVKLMMEPLLEPHFLDDSYGYRPNKSALDAVG
VTRKRCWEYDWVVEFDIKGLFDNLSHELLMKAVKHHISDRWILLYVERWLTAPIQDQHGGCLPRTAGTPQGGVISPLLSN
LFLHYAFDHWMTKHHPDNPWCRYADDGLAHCRTEKEAEQMLKEIDKRFKSLGLEIHPDKTKIVYCKDGARKGKYKNKSFD
FLGYTFKARRVKVRSRNSFFIGFTPVVSLKAVKAMTLKLRRGNWRNNTSLSLQELADFINPMLRGWLAYYGKYSRSSMYR
VWRCVNNMLLAWAKKKYKTLGRSRTKAGKLMERIHKEMPALFVHWRKGMFGALT

Sequences:

>Translated_454_residues
MHWGGATRISVEVTVMVMERRGCVKSLALMYNWKQDDILVTIKPFNIPKQLVWQAYKLVRANAGSAGIDNQSIDEFSQDL
KGNLYKLWNRMSSGSYFPPAVKEVAIPKKQGGVRKLGIPTVADRIAQMTVKLMMEPLLEPHFLDDSYGYRPNKSALDAVG
VTRKRCWEYDWVVEFDIKGLFDNLSHELLMKAVKHHISDRWILLYVERWLTAPIQDQHGGCLPRTAGTPQGGVISPLLSN
LFLHYAFDHWMTKHHPDNPWCRYADDGLAHCRTEKEAEQMLKEIDKRFKSLGLEIHPDKTKIVYCKDGARKGKYKNKSFD
FLGYTFKARRVKVRSRNSFFIGFTPVVSLKAVKAMTLKLRRGNWRNNTSLSLQELADFINPMLRGWLAYYGKYSRSSMYR
VWRCVNNMLLAWAKKKYKTLGRSRTKAGKLMERIHKEMPALFVHWRKGMFGALT
>Mature_454_residues
MHWGGATRISVEVTVMVMERRGCVKSLALMYNWKQDDILVTIKPFNIPKQLVWQAYKLVRANAGSAGIDNQSIDEFSQDL
KGNLYKLWNRMSSGSYFPPAVKEVAIPKKQGGVRKLGIPTVADRIAQMTVKLMMEPLLEPHFLDDSYGYRPNKSALDAVG
VTRKRCWEYDWVVEFDIKGLFDNLSHELLMKAVKHHISDRWILLYVERWLTAPIQDQHGGCLPRTAGTPQGGVISPLLSN
LFLHYAFDHWMTKHHPDNPWCRYADDGLAHCRTEKEAEQMLKEIDKRFKSLGLEIHPDKTKIVYCKDGARKGKYKNKSFD
FLGYTFKARRVKVRSRNSFFIGFTPVVSLKAVKAMTLKLRRGNWRNNTSLSLQELADFINPMLRGWLAYYGKYSRSSMYR
VWRCVNNMLLAWAKKKYKTLGRSRTKAGKLMERIHKEMPALFVHWRKGMFGALT

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=355, Percent_Identity=24.5070422535211, Blast_Score=106, Evalue=9e-24,
Organism=Saccharomyces cerevisiae, GI6226521, Length=317, Percent_Identity=24.2902208201893, Blast_Score=101, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 52548; Mature: 52548

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHWGGATRISVEVTVMVMERRGCVKSLALMYNWKQDDILVTIKPFNIPKQLVWQAYKLVR
CCCCCCEEEEEEEEEEEEHHCCHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHH
ANAGSAGIDNQSIDEFSQDLKGNLYKLWNRMSSGSYFPPAVKEVAIPKKQGGVRKLGIPT
CCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCEECCCHH
VADRIAQMTVKLMMEPLLEPHFLDDSYGYRPNKSALDAVGVTRKRCWEYDWVVEFDIKGL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHCCCCEEEEEEHHHH
FDNLSHELLMKAVKHHISDRWILLYVERWLTAPIQDQHGGCLPRTAGTPQGGVISPLLSN
HHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
LFLHYAFDHWMTKHHPDNPWCRYADDGLAHCRTEKEAEQMLKEIDKRFKSLGLEIHPDKT
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCEECCCCE
KIVYCKDGARKGKYKNKSFDFLGYTFKARRVKVRSRNSFFIGFTPVVSLKAVKAMTLKLR
EEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHEE
RGNWRNNTSLSLQELADFINPMLRGWLAYYGKYSRSSMYRVWRCVNNMLLAWAKKKYKTL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GRSRTKAGKLMERIHKEMPALFVHWRKGMFGALT
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MHWGGATRISVEVTVMVMERRGCVKSLALMYNWKQDDILVTIKPFNIPKQLVWQAYKLVR
CCCCCCEEEEEEEEEEEEHHCCHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHH
ANAGSAGIDNQSIDEFSQDLKGNLYKLWNRMSSGSYFPPAVKEVAIPKKQGGVRKLGIPT
CCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCEECCCHH
VADRIAQMTVKLMMEPLLEPHFLDDSYGYRPNKSALDAVGVTRKRCWEYDWVVEFDIKGL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHCCCCEEEEEEHHHH
FDNLSHELLMKAVKHHISDRWILLYVERWLTAPIQDQHGGCLPRTAGTPQGGVISPLLSN
HHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
LFLHYAFDHWMTKHHPDNPWCRYADDGLAHCRTEKEAEQMLKEIDKRFKSLGLEIHPDKT
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCEECCCCE
KIVYCKDGARKGKYKNKSFDFLGYTFKARRVKVRSRNSFFIGFTPVVSLKAVKAMTLKLR
EEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHEE
RGNWRNNTSLSLQELADFINPMLRGWLAYYGKYSRSSMYRVWRCVNNMLLAWAKKKYKTL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GRSRTKAGKLMERIHKEMPALFVHWRKGMFGALT
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]