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The map label for this gene is intD [H]

Identifier: 148359904

GI number: 148359904

Start: 2781725

End: 2782849

Strand: Reverse

Name: intD [H]

Synonym: LPC_1833

Alternate gene names: 148359904

Gene position: 2782849-2781725 (Counterclockwise)

Preceding gene: 148359905

Following gene: 148359898

Centisome position: 77.81

GC content: 42.84

Gene sequence:

>1125_bases
ATGGGACGAAAACGAACACCAGGGCTTCAAAAGCGTGGGGAGTTCTGGGCCATTGACAAGAAGGTTTTCGGACGCCGACT
TTGCGAAAGCACTGGTACTAGCGACCTCGAAGAGGCCGAAAAGTATCTTGCAAGGCGGCTTGAAGAAATAAGACAGGCAA
CTGTTTATGGTGTCAGGCCTAAAAGAAATTTTATGGAAGCAGCAACAAAATTTCTGATGGAGAATCAGCACAAACGTAGT
CTTCATGATGATGCAGGAAGATTACGTGAGTTAGTGAAATACATTGGAGATATGCCGCTCGAATCGATTCATATGGGGGC
TCTTCAGCCTTTTGTAGAAGGCAGGAGGAAAGATGGTGTGAGTACTCGAACTATAAACCATGGTTTACAAGTGGTAAGGC
GAATACTCAATCTTGCTGCCAGTGAATGGATGGATGAATATGGCTTAACGTGGATCATTAATGCTCCAAAAATTAAATTG
TTACCAGAGCATGATCTGCGCAAACCTTATCCATTGAATTGGGATGAGCAACACCGGCTTTTTAATGAGCTACCTTCTCA
CCTGGAAAAAATGGCGTTATTTGCTGTGAATACTGGGTGTAGAGATCAGGAAATATGTGAGTTGCGCTGGGATTGGGAAA
TAAAGATTCCAGAGTTATCCCATATTATGGTGTTCATCATTCCTGCTGAGTTGGTAAAAAATGGTGAAGAGCGATTAGTT
GTTTGTAATGACACAGCTCGTTCAGTTGTTGAAGAAGAGAGAGGCAAGCATCCTACTCACGTGTTTAGTTTTAGAGGGAA
GCCCTTAGCTCGGATTTTATCAACTGGATGGCGTCAAGCAAGAATTAAAGCCAATCTTCAACAGGTGCGTGTTCACGATC
TCAAGCATACTTTTGGTCGGAGGTTACGTGCCGCTGGTGTAAGTTTTGAAGATAGGCAGGATTTGCTTGGTCATCGTTCA
GGCCGGATTACGACACACTATTCATCAGCAGAATTACAAAATCTGTATGATGCTGCGAATAAAGTGTGTGAAAAACAAAA
AAGCGGGGTAGTACTGACTTTGTTGCGTAATCCAAATTTGAGAATGCCTGCAAATAAACAGGCTTCAAAGGTAGTTGCTT
TATAG

Upstream 100 bases:

>100_bases
AAGGGGTAGCATTCGATCGACTTGATTTAGACGCCTGGGTAGACGATTATAAGCAATGTAGTGGTCGTCCCGCAGCAACC
AATCAAAGGAGTATGGGTAA

Downstream 100 bases:

>100_bases
GATTTTAAATGTAGGTCACGTAAAAGTCACGCAAGGACTTTTGAGGTGACTAAGGTTTCAAGTGTAACTTATTGATTTTA
CTGGCTTTAATTGGTGGGCC

Product: hypothetical protein

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MGRKRTPGLQKRGEFWAIDKKVFGRRLCESTGTSDLEEAEKYLARRLEEIRQATVYGVRPKRNFMEAATKFLMENQHKRS
LHDDAGRLRELVKYIGDMPLESIHMGALQPFVEGRRKDGVSTRTINHGLQVVRRILNLAASEWMDEYGLTWIINAPKIKL
LPEHDLRKPYPLNWDEQHRLFNELPSHLEKMALFAVNTGCRDQEICELRWDWEIKIPELSHIMVFIIPAELVKNGEERLV
VCNDTARSVVEEERGKHPTHVFSFRGKPLARILSTGWRQARIKANLQQVRVHDLKHTFGRRLRAAGVSFEDRQDLLGHRS
GRITTHYSSAELQNLYDAANKVCEKQKSGVVLTLLRNPNLRMPANKQASKVVAL

Sequences:

>Translated_374_residues
MGRKRTPGLQKRGEFWAIDKKVFGRRLCESTGTSDLEEAEKYLARRLEEIRQATVYGVRPKRNFMEAATKFLMENQHKRS
LHDDAGRLRELVKYIGDMPLESIHMGALQPFVEGRRKDGVSTRTINHGLQVVRRILNLAASEWMDEYGLTWIINAPKIKL
LPEHDLRKPYPLNWDEQHRLFNELPSHLEKMALFAVNTGCRDQEICELRWDWEIKIPELSHIMVFIIPAELVKNGEERLV
VCNDTARSVVEEERGKHPTHVFSFRGKPLARILSTGWRQARIKANLQQVRVHDLKHTFGRRLRAAGVSFEDRQDLLGHRS
GRITTHYSSAELQNLYDAANKVCEKQKSGVVLTLLRNPNLRMPANKQASKVVAL
>Mature_373_residues
GRKRTPGLQKRGEFWAIDKKVFGRRLCESTGTSDLEEAEKYLARRLEEIRQATVYGVRPKRNFMEAATKFLMENQHKRSL
HDDAGRLRELVKYIGDMPLESIHMGALQPFVEGRRKDGVSTRTINHGLQVVRRILNLAASEWMDEYGLTWIINAPKIKLL
PEHDLRKPYPLNWDEQHRLFNELPSHLEKMALFAVNTGCRDQEICELRWDWEIKIPELSHIMVFIIPAELVKNGEERLVV
CNDTARSVVEEERGKHPTHVFSFRGKPLARILSTGWRQARIKANLQQVRVHDLKHTFGRRLRAAGVSFEDRQDLLGHRSG
RITTHYSSAELQNLYDAANKVCEKQKSGVVLTLLRNPNLRMPANKQASKVVAL

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=375, Percent_Identity=25.6, Blast_Score=93, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43220; Mature: 43089

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRKRTPGLQKRGEFWAIDKKVFGRRLCESTGTSDLEEAEKYLARRLEEIRQATVYGVRP
CCCCCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
KRNFMEAATKFLMENQHKRSLHDDAGRLRELVKYIGDMPLESIHMGALQPFVEGRRKDGV
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
STRTINHGLQVVRRILNLAASEWMDEYGLTWIINAPKIKLLPEHDLRKPYPLNWDEQHRL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCCCCCCCCCCHHHHH
FNELPSHLEKMALFAVNTGCRDQEICELRWDWEIKIPELSHIMVFIIPAELVKNGEERLV
HHHHHHHHHHHHHHHCCCCCCCCHHHEEECCEEEECCCCCCEEEEEEEHHHHCCCCCEEE
VCNDTARSVVEEERGKHPTHVFSFRGKPLARILSTGWRQARIKANLQQVRVHDLKHTFGR
EECHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RLRAAGVSFEDRQDLLGHRSGRITTHYSSAELQNLYDAANKVCEKQKSGVVLTLLRNPNL
HHHHCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
RMPANKQASKVVAL
CCCCCCCCHHCCCC
>Mature Secondary Structure 
GRKRTPGLQKRGEFWAIDKKVFGRRLCESTGTSDLEEAEKYLARRLEEIRQATVYGVRP
CCCCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
KRNFMEAATKFLMENQHKRSLHDDAGRLRELVKYIGDMPLESIHMGALQPFVEGRRKDGV
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
STRTINHGLQVVRRILNLAASEWMDEYGLTWIINAPKIKLLPEHDLRKPYPLNWDEQHRL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCCCCCCCCCCHHHHH
FNELPSHLEKMALFAVNTGCRDQEICELRWDWEIKIPELSHIMVFIIPAELVKNGEERLV
HHHHHHHHHHHHHHHCCCCCCCCHHHEEECCEEEECCCCCCEEEEEEEHHHHCCCCCEEE
VCNDTARSVVEEERGKHPTHVFSFRGKPLARILSTGWRQARIKANLQQVRVHDLKHTFGR
EECHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RLRAAGVSFEDRQDLLGHRSGRITTHYSSAELQNLYDAANKVCEKQKSGVVLTLLRNPNL
HHHHCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
RMPANKQASKVVAL
CCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]