Click here to switch to the map view.

The map label for this gene is ydaL [H]

Identifier: 148359838

GI number: 148359838

Start: 2716450

End: 2717223

Strand: Reverse

Name: ydaL [H]

Synonym: LPC_1766

Alternate gene names: 148359838

Gene position: 2717223-2716450 (Counterclockwise)

Preceding gene: 148359839

Following gene: 148359837

Centisome position: 75.97

GC content: 40.96

Gene sequence:

>774_bases
ATGGCGAAAGAATATTATTTATCCGATGAGATCGAAGAAATAGTGCTCGCGAGTACTGTATTGTCTTACTCTCGACCCAA
TTTATCATCAAAACGTTTCAATGATTTAAAAAATGGAAAAACTCCCTGGGAAGCGGAACTGGATTTAAACGGTTTAAACG
TTGAATCTGCTCGTAAGAGCTTATATCAATTTATCCAAACTCAAATAAAAAATAACAAACAATGCGTTCTAATTATTCAT
GGCGCGGATAATTCTCAGGACAAACCGCCTTTAATGAAAAATCTGGTGAATCGGTGGTTGCCTCAGATCAATGAGGTATT
GGCATTTCATAGCGCCAAACCCAAGGATGGTGGTTCTGCAGCTGTTTATGTCTTGTTGGGCTCAGTATTTCATGTTGAGT
TACCCACACGATTGCCTTCCAATCGCAGTGAAAGTACTTTCTTGGTTGCTGAAACAAAAGCAATGGAAAGACGAAGACGT
TTGGCTGAACAGCAGGGAGAGAGAAGGTTTGCTTCTGTTAAAGCGCGTGAACACCCTGAAGAAGAAATCAAGGCTGCTCC
AGAGGGGGAGTTGCAAAACAATATATTGCAACACCCTGAATTGAATAGTCAGCGTTTTGATGGAATAGATCCTAATTTAA
ACCCTGAACCGCCGCTTAATACAGAAGCAAGAAGGGAGTTTGATAATGAGAGAAGAGAACAGGATAAAGAAAAACAATTA
CGCTTAGGCAATATGCCAAAATTTACTACAGCACCTACCCCCCGGGGGCCCTAA

Upstream 100 bases:

>100_bases
TGTATGCCTCCATAAGGTCATGCAGGTTATATTAGAAAAAATGCCATACTTTTTATATCCTAAGTTATACTTCTATTATG
ACTGTTAAATTTTGAAAAAG

Downstream 100 bases:

>100_bases
ATGAGTATTGCAAACGATATTATCAGTCATAGAATGCCTGATTTTGATGCTTATCTGCGTGCAGGGGAATCTTTGGATGA
TATCGATGAATATGGTTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MAKEYYLSDEIEEIVLASTVLSYSRPNLSSKRFNDLKNGKTPWEAELDLNGLNVESARKSLYQFIQTQIKNNKQCVLIIH
GADNSQDKPPLMKNLVNRWLPQINEVLAFHSAKPKDGGSAAVYVLLGSVFHVELPTRLPSNRSESTFLVAETKAMERRRR
LAEQQGERRFASVKAREHPEEEIKAAPEGELQNNILQHPELNSQRFDGIDPNLNPEPPLNTEARREFDNERREQDKEKQL
RLGNMPKFTTAPTPRGP

Sequences:

>Translated_257_residues
MAKEYYLSDEIEEIVLASTVLSYSRPNLSSKRFNDLKNGKTPWEAELDLNGLNVESARKSLYQFIQTQIKNNKQCVLIIH
GADNSQDKPPLMKNLVNRWLPQINEVLAFHSAKPKDGGSAAVYVLLGSVFHVELPTRLPSNRSESTFLVAETKAMERRRR
LAEQQGERRFASVKAREHPEEEIKAAPEGELQNNILQHPELNSQRFDGIDPNLNPEPPLNTEARREFDNERREQDKEKQL
RLGNMPKFTTAPTPRGP
>Mature_256_residues
AKEYYLSDEIEEIVLASTVLSYSRPNLSSKRFNDLKNGKTPWEAELDLNGLNVESARKSLYQFIQTQIKNNKQCVLIIHG
ADNSQDKPPLMKNLVNRWLPQINEVLAFHSAKPKDGGSAAVYVLLGSVFHVELPTRLPSNRSESTFLVAETKAMERRRRL
AEQQGERRFASVKAREHPEEEIKAAPEGELQNNILQHPELNSQRFDGIDPNLNPEPPLNTEARREFDNERREQDKEKQLR
LGNMPKFTTAPTPRGP

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=122, Percent_Identity=33.6065573770492, Blast_Score=74, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 29352; Mature: 29221

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEYYLSDEIEEIVLASTVLSYSRPNLSSKRFNDLKNGKTPWEAELDLNGLNVESARKS
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHH
LYQFIQTQIKNNKQCVLIIHGADNSQDKPPLMKNLVNRWLPQINEVLAFHSAKPKDGGSA
HHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
AVYVLLGSVFHVELPTRLPSNRSESTFLVAETKAMERRRRLAEQQGERRFASVKAREHPE
HHHHHHHHHHEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
EEIKAAPEGELQNNILQHPELNSQRFDGIDPNLNPEPPLNTEARREFDNERREQDKEKQL
HHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RLGNMPKFTTAPTPRGP
HCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKEYYLSDEIEEIVLASTVLSYSRPNLSSKRFNDLKNGKTPWEAELDLNGLNVESARKS
CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHH
LYQFIQTQIKNNKQCVLIIHGADNSQDKPPLMKNLVNRWLPQINEVLAFHSAKPKDGGSA
HHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
AVYVLLGSVFHVELPTRLPSNRSESTFLVAETKAMERRRRLAEQQGERRFASVKAREHPE
HHHHHHHHHHEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
EEIKAAPEGELQNNILQHPELNSQRFDGIDPNLNPEPPLNTEARREFDNERREQDKEKQL
HHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RLGNMPKFTTAPTPRGP
HCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]