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The map label for this gene is ybeQ [H]

Identifier: 148359764

GI number: 148359764

Start: 2626526

End: 2627653

Strand: Reverse

Name: ybeQ [H]

Synonym: LPC_1689

Alternate gene names: 148359764

Gene position: 2627653-2626526 (Counterclockwise)

Preceding gene: 148359766

Following gene: 148359763

Centisome position: 73.47

GC content: 40.16

Gene sequence:

>1128_bases
ATGGACATGAAAAAATATATTTTATCTCTTTCTTTACTGACAGTGCTTAACTCTTCAGCTATCGCTACGACTCAGGAAGG
TGAGGAAGCCTATAACAAAGGGTATTACGAAAAAGCATTTATTTTGTTGTCTCCCGAAGCTGATAAAGGAGATGCCAAAG
CTCAATATTTGCTGGGTAAGATGTATTATAATGCCCAAGGTGTAACTTATAATCCGGAAAAAACAGAGCAATTATTACTT
GCCTCAGCGAATCAAGGCAATGTCGATGCCCAGGTGTTGTTAGCGGGTTTCTATTGGTACCTTAATACACCAGATGGCTA
TAAAAAGGCGTTTGAATGGTATCAGAAAGCAGCTGATCAAAATAATGCAGATGGTCAATATGGCTTGGGCTATATGTATG
ATACAGGAACTGGCGTACCTCAGAATTCCGATACAGCCATGGTATGGTATAAAAAAGCAGCGGAGCAAGGCAACTCTAAT
GCGGCTTTGGCTATTGGTTATAATTATGATACCGGAACAGGGGTGAAAAAGGATAAGACTCAAGCTCTCAACTGGTATGC
AAAAGCAGCTGACTTAGGTAATGCCAGCGCACAATATAATCTTGGTTTGATGTATGAGCAAGGGGATGGTGTTCCTAAAG
ATTATCAGAAGGCAGCAGAATATTTCGAGAAAGCAGCGAATCAAGATCATGCCAAATCACAATTGGAGTTAGGTTATTTA
TATGACTCTGGAAAATTAGGTAAATCGGATCTGCAAAAGGCCGCTTTTTGGTATCAAAAAAGCGCAGACCTGGGAAATGC
TAATGCACAATTTAATTTAGCTGATATGTATTTTTATGGTGATGGGGTCGGAAAAAGCCTTGAGCAATCCGTATACTGGA
TGCAAAAAGCGGCCGAGCAAGGTTATGGTAAGGCTCAAAATCAATTAGGTGTCTATTACAGAGATGGTATTGGTGTTGCT
GCTGATCCTATAAAGGCTTATGCCTGGTTTACAGCCGCCAAGAATAACGGGTTTGAAAAAGCGGCTAGCAATGCCAGTGA
TCTTGAGAAATCTATGAACCCAGAGGATCTGAGTAAGGCGAGAATTTTAGGACAACAATATACGGATAATTATAAGGCTA
AAAAATAA

Upstream 100 bases:

>100_bases
AATGAAAGATAAAAAAAGCAAAATGAAAAAGCATTTTATACATTGTTGAATTTGTGTCATATACTTTAAAGCGATAGCTC
TTAAAAATAAGGTATATATC

Downstream 100 bases:

>100_bases
TTATTCAGGAGTTACGAAGAGATGGGAGTTTTTCGTAACTCCGGTTATTGTTACCTGCTTTTAAAAGCTTCGGATGCTGC
ATTTTTTGTGGGCTATTCGG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MDMKKYILSLSLLTVLNSSAIATTQEGEEAYNKGYYEKAFILLSPEADKGDAKAQYLLGKMYYNAQGVTYNPEKTEQLLL
ASANQGNVDAQVLLAGFYWYLNTPDGYKKAFEWYQKAADQNNADGQYGLGYMYDTGTGVPQNSDTAMVWYKKAAEQGNSN
AALAIGYNYDTGTGVKKDKTQALNWYAKAADLGNASAQYNLGLMYEQGDGVPKDYQKAAEYFEKAANQDHAKSQLELGYL
YDSGKLGKSDLQKAAFWYQKSADLGNANAQFNLADMYFYGDGVGKSLEQSVYWMQKAAEQGYGKAQNQLGVYYRDGIGVA
ADPIKAYAWFTAAKNNGFEKAASNASDLEKSMNPEDLSKARILGQQYTDNYKAKK

Sequences:

>Translated_375_residues
MDMKKYILSLSLLTVLNSSAIATTQEGEEAYNKGYYEKAFILLSPEADKGDAKAQYLLGKMYYNAQGVTYNPEKTEQLLL
ASANQGNVDAQVLLAGFYWYLNTPDGYKKAFEWYQKAADQNNADGQYGLGYMYDTGTGVPQNSDTAMVWYKKAAEQGNSN
AALAIGYNYDTGTGVKKDKTQALNWYAKAADLGNASAQYNLGLMYEQGDGVPKDYQKAAEYFEKAANQDHAKSQLELGYL
YDSGKLGKSDLQKAAFWYQKSADLGNANAQFNLADMYFYGDGVGKSLEQSVYWMQKAAEQGYGKAQNQLGVYYRDGIGVA
ADPIKAYAWFTAAKNNGFEKAASNASDLEKSMNPEDLSKARILGQQYTDNYKAKK
>Mature_375_residues
MDMKKYILSLSLLTVLNSSAIATTQEGEEAYNKGYYEKAFILLSPEADKGDAKAQYLLGKMYYNAQGVTYNPEKTEQLLL
ASANQGNVDAQVLLAGFYWYLNTPDGYKKAFEWYQKAADQNNADGQYGLGYMYDTGTGVPQNSDTAMVWYKKAAEQGNSN
AALAIGYNYDTGTGVKKDKTQALNWYAKAADLGNASAQYNLGLMYEQGDGVPKDYQKAAEYFEKAANQDHAKSQLELGYL
YDSGKLGKSDLQKAAFWYQKSADLGNANAQFNLADMYFYGDGVGKSLEQSVYWMQKAAEQGYGKAQNQLGVYYRDGIGVA
ADPIKAYAWFTAAKNNGFEKAASNASDLEKSMNPEDLSKARILGQQYTDNYKAKK

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI19923669, Length=291, Percent_Identity=31.2714776632302, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI151301150, Length=321, Percent_Identity=29.595015576324, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI217330658, Length=180, Percent_Identity=31.6666666666667, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI217330656, Length=180, Percent_Identity=31.6666666666667, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI33620759, Length=241, Percent_Identity=28.6307053941909, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI154689719, Length=232, Percent_Identity=29.7413793103448, Blast_Score=74, Evalue=3e-13,
Organism=Escherichia coli, GI87081769, Length=259, Percent_Identity=39.3822393822394, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI1786867, Length=123, Percent_Identity=35.7723577235772, Blast_Score=80, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17563256, Length=314, Percent_Identity=29.9363057324841, Blast_Score=104, Evalue=6e-23,
Organism=Saccharomyces cerevisiae, GI6319998, Length=269, Percent_Identity=29.368029739777, Blast_Score=81, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6319410, Length=280, Percent_Identity=28.2142857142857, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21355295, Length=328, Percent_Identity=30.7926829268293, Blast_Score=114, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 41459; Mature: 41459

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMKKYILSLSLLTVLNSSAIATTQEGEEAYNKGYYEKAFILLSPEADKGDAKAQYLLGK
CCHHHHHHHHHHHHHHCCCCEEECCCCHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHH
MYYNAQGVTYNPEKTEQLLLASANQGNVDAQVLLAGFYWYLNTPDGYKKAFEWYQKAADQ
HEECCCCCEECCCHHHEEEEEECCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCC
NNADGQYGLGYMYDTGTGVPQNSDTAMVWYKKAAEQGNSNAALAIGYNYDTGTGVKKDKT
CCCCCCCCCEEEEECCCCCCCCCCCEEEEEEHHHHCCCCCEEEEEEECCCCCCCCCCCHH
QALNWYAKAADLGNASAQYNLGLMYEQGDGVPKDYQKAAEYFEKAANQDHAKSQLELGYL
HHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHEEEEEE
YDSGKLGKSDLQKAAFWYQKSADLGNANAQFNLADMYFYGDGVGKSLEQSVYWMQKAAEQ
ECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
GYGKAQNQLGVYYRDGIGVAADPIKAYAWFTAAKNNGFEKAASNASDLEKSMNPEDLSKA
CCCCHHHCCCEEEECCCCCCCCCHHHEEEEEECCCCCHHHHHCCHHHHHHCCCHHHHHHH
RILGQQYTDNYKAKK
HHHHHHHCCCCCCCC
>Mature Secondary Structure
MDMKKYILSLSLLTVLNSSAIATTQEGEEAYNKGYYEKAFILLSPEADKGDAKAQYLLGK
CCHHHHHHHHHHHHHHCCCCEEECCCCHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHH
MYYNAQGVTYNPEKTEQLLLASANQGNVDAQVLLAGFYWYLNTPDGYKKAFEWYQKAADQ
HEECCCCCEECCCHHHEEEEEECCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCC
NNADGQYGLGYMYDTGTGVPQNSDTAMVWYKKAAEQGNSNAALAIGYNYDTGTGVKKDKT
CCCCCCCCCEEEEECCCCCCCCCCCEEEEEEHHHHCCCCCEEEEEEECCCCCCCCCCCHH
QALNWYAKAADLGNASAQYNLGLMYEQGDGVPKDYQKAAEYFEKAANQDHAKSQLELGYL
HHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHEEEEEE
YDSGKLGKSDLQKAAFWYQKSADLGNANAQFNLADMYFYGDGVGKSLEQSVYWMQKAAEQ
ECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
GYGKAQNQLGVYYRDGIGVAADPIKAYAWFTAAKNNGFEKAASNASDLEKSMNPEDLSKA
CCCCHHHCCCEEEECCCCCCCCCHHHEEEEEECCCCCHHHHHCCHHHHHHCCCHHHHHHH
RILGQQYTDNYKAKK
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]