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The map label for this gene is ocd2 [H]

Identifier: 148359735

GI number: 148359735

Start: 2594477

End: 2595448

Strand: Reverse

Name: ocd2 [H]

Synonym: LPC_1659

Alternate gene names: 148359735

Gene position: 2595448-2594477 (Counterclockwise)

Preceding gene: 148359736

Following gene: 148359734

Centisome position: 72.57

GC content: 39.92

Gene sequence:

>972_bases
ATGAGTCTCAGGATATTGTCCTTAAGCGATGTAAAGCATAGCATCACCATGCATCAGGCAATCAGTGCTTTGGAAAGCGC
ATTTATTCAATTAGCAAATAACACGGTGAAGTTGCCCTTGAGAACGGGTGTTACTATTGAAGAAGAAAACGGATTAATGT
TGACTATGCCGGGTTATCTTGCCCAGGAAAAAAGCTTAGGCTTAAAAGTAGTATCCATTTTTCCTGAAAATTTGGCTAAA
AATAAACCTACTATCACTGGTTTTATTATGTTGCTTGACGCAACGACAGGTGAAGCTAAAGTATTAATGGATGCTGCTTA
CCTCACTTCTTTAAGAACGGGCGCTGTTTCAGGGTTGGCAACACAATATTTTGCACGCGATAATGCGACTCGGGTCGCGA
TCATTGGGTCAGGTGCTCAAGCGAAAACACAACTTGAGGCGGTTGCTTCTGTGCGAGATATGCAACAGGTTTTTGTTTGG
TCGCGCAATATTAAAAATGCCGAAAAATTTGCTAAAGAATTCGAAGATCAATTTGATATGACAATTTGTTCTTCTGTCGC
CATGGCAGTGAAAGATGCCGATATTATTTGTACAGCAACCAATAGCACAGAACCACTGATCCATTTTGGAGACATTTCGC
CACATGTCCATATTAATGCCATAGGTTCTCATCACCCCTCAATGAAAGAAATTAGCCATGATGTGTTAAGCCGAGCAGTG
GTGATTGCTGATCAGTTAGACGCTGTTTTAGCTGAATCAGGCGAAATCATTAGTGCAGTAGAGCACAATCATTTAAAAAA
GGAATCCATTATTGAAATCGGCCAATGGTTATTACAAAAGAATACTGACTGCAAAGATAAGCTCACGGTGTTTAAATCCG
TTGGCTTGGCAATACAGGATTTAAGTGTTGCCAATGCTGTTTATCAAAATGCATTGAAGAAAAATCTGGGTGAGTTGTTT
TCTATAAGTTAG

Upstream 100 bases:

>100_bases
CTTTGATATGAAAACAGGCAATACCTTATTTGATTTAAAACCATAAGATGTGATTCTATGCAGTCACTACGTAGTTAACT
AAAGTATAGGGTTTATTGAT

Downstream 100 bases:

>100_bases
TAAGGGTAAAACCGAGTAGAGTGAGTATAAATGAATCATTCTGTAAAAAAGAAAATGATTATTTCAGTTTTATATTCCTT
ACGTCATCTGATTGCTTTAC

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MSLRILSLSDVKHSITMHQAISALESAFIQLANNTVKLPLRTGVTIEEENGLMLTMPGYLAQEKSLGLKVVSIFPENLAK
NKPTITGFIMLLDATTGEAKVLMDAAYLTSLRTGAVSGLATQYFARDNATRVAIIGSGAQAKTQLEAVASVRDMQQVFVW
SRNIKNAEKFAKEFEDQFDMTICSSVAMAVKDADIICTATNSTEPLIHFGDISPHVHINAIGSHHPSMKEISHDVLSRAV
VIADQLDAVLAESGEIISAVEHNHLKKESIIEIGQWLLQKNTDCKDKLTVFKSVGLAIQDLSVANAVYQNALKKNLGELF
SIS

Sequences:

>Translated_323_residues
MSLRILSLSDVKHSITMHQAISALESAFIQLANNTVKLPLRTGVTIEEENGLMLTMPGYLAQEKSLGLKVVSIFPENLAK
NKPTITGFIMLLDATTGEAKVLMDAAYLTSLRTGAVSGLATQYFARDNATRVAIIGSGAQAKTQLEAVASVRDMQQVFVW
SRNIKNAEKFAKEFEDQFDMTICSSVAMAVKDADIICTATNSTEPLIHFGDISPHVHINAIGSHHPSMKEISHDVLSRAV
VIADQLDAVLAESGEIISAVEHNHLKKESIIEIGQWLLQKNTDCKDKLTVFKSVGLAIQDLSVANAVYQNALKKNLGELF
SIS
>Mature_322_residues
SLRILSLSDVKHSITMHQAISALESAFIQLANNTVKLPLRTGVTIEEENGLMLTMPGYLAQEKSLGLKVVSIFPENLAKN
KPTITGFIMLLDATTGEAKVLMDAAYLTSLRTGAVSGLATQYFARDNATRVAIIGSGAQAKTQLEAVASVRDMQQVFVWS
RNIKNAEKFAKEFEDQFDMTICSSVAMAVKDADIICTATNSTEPLIHFGDISPHVHINAIGSHHPSMKEISHDVLSRAVV
IADQLDAVLAESGEIISAVEHNHLKKESIIEIGQWLLQKNTDCKDKLTVFKSVGLAIQDLSVANAVYQNALKKNLGELFS
IS

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=296, Percent_Identity=32.0945945945946, Blast_Score=152, Evalue=3e-37,
Organism=Homo sapiens, GI62241008, Length=275, Percent_Identity=32.7272727272727, Blast_Score=150, Evalue=1e-36,
Organism=Drosophila melanogaster, GI24642678, Length=304, Percent_Identity=28.9473684210526, Blast_Score=115, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 35106; Mature: 34975

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRILSLSDVKHSITMHQAISALESAFIQLANNTVKLPLRTGVTIEEENGLMLTMPGYL
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEECCCCEEEEECCHH
AQEKSLGLKVVSIFPENLAKNKPTITGFIMLLDATTGEAKVLMDAAYLTSLRTGAVSGLA
HHHHCCCEEEEEECCHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
TQYFARDNATRVAIIGSGAQAKTQLEAVASVRDMQQVFVWSRNIKNAEKFAKEFEDQFDM
HHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
TICSSVAMAVKDADIICTATNSTEPLIHFGDISPHVHINAIGSHHPSMKEISHDVLSRAV
HHHHHHHHHHCCCCEEEEECCCCCCEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
VIADQLDAVLAESGEIISAVEHNHLKKESIIEIGQWLLQKNTDCKDKLTVFKSVGLAIQD
HHHHHHHHHHHCCCCEEHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHH
LSVANAVYQNALKKNLGELFSIS
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLRILSLSDVKHSITMHQAISALESAFIQLANNTVKLPLRTGVTIEEENGLMLTMPGYL
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEECCCCEEEEECCHH
AQEKSLGLKVVSIFPENLAKNKPTITGFIMLLDATTGEAKVLMDAAYLTSLRTGAVSGLA
HHHHCCCEEEEEECCHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
TQYFARDNATRVAIIGSGAQAKTQLEAVASVRDMQQVFVWSRNIKNAEKFAKEFEDQFDM
HHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
TICSSVAMAVKDADIICTATNSTEPLIHFGDISPHVHINAIGSHHPSMKEISHDVLSRAV
HHHHHHHHHHCCCCEEEEECCCCCCEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
VIADQLDAVLAESGEIISAVEHNHLKKESIIEIGQWLLQKNTDCKDKLTVFKSVGLAIQD
HHHHHHHHHHHCCCCEEHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHH
LSVANAVYQNALKKNLGELFSIS
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]