Click here to switch to the map view.

The map label for this gene is 148359645

Identifier: 148359645

GI number: 148359645

Start: 2434733

End: 2435089

Strand: Reverse

Name: 148359645

Synonym: LPC_1563

Alternate gene names: NA

Gene position: 2435089-2434733 (Counterclockwise)

Preceding gene: 148359646

Following gene: 148359643

Centisome position: 68.09

GC content: 35.85

Gene sequence:

>357_bases
ATGGCTAACTATGTAGCATTTCTTGCAGTATTATCTGGATGTTTGTCCAACATCCAAGGAAATATGATGCATCCATCTTA
TGTTTATATTCTCGCAAGTCAGCGTAATGGTACTCTTTACATAGGTTCTACGTCAGACATCATTAATCGAGTCTGGGAGC
ACAAAAATAAAGTCATTCCTGGCTTTACTGCAAAGTATAACGTACATATGCTTGTCTATTATGAAATGTATGACTTATAT
ATTGACGCAGCTCGTCGTGAAAAACGTTTCAAAAATTGGCCAAGACAGTGGAAAATAAATTTAATCGAGAAATTTAATCC
AGAATGGCGTGATCTGTATGAAGAGATTTGCCAATGA

Upstream 100 bases:

>100_bases
ATTTATTCGCTAGAATAAAGCATTTCCGTGCAATTGCTACAAGATTTGATAAATTAAAGCAAAATTATGCTTCTGTTGTT
GCTATGGCGTATTTATTTTT

Downstream 100 bases:

>100_bases
TTTAGATCTAATGGATGCCGCGGACAAGCCGCGGCACGTAGGCGGCAGGTGAAATGTCAACAGACCCTAGTGACCACGTC
ATCCTGTTGAGATGTTATTA

Product: endonuclease

Products: NA

Alternate protein names: Excinuclease ABC C Subunit Domain Protein; Endonuclease; Endo/Excinuclease Amino Terminal Domain-Containing Protein; Excinuclease ABC Subunit C Domain-Containing Protein; Excinuclease ABC C Subunit; Excinuclease ABC C Subunit Domain-Containing Protein; Excinuclease ABC C Subunit-Like Protein; Endo/Excinuclease Amino Terminal Domain Protein; GIY-YIG Catalytic Domain-Containing Protein; Endonuclease Containing A URI Domain; Endonuclease Protein; Crossover Junction Endodeoxyribonuclease RuvC; Excinuclease ABC; GIY-YIG Endonuclease Domain-Containing Protein; Endo/Excinuclease; Excinuclease ABCsubunit C Domain-Containing Protein; Excinuclease ABC C Subunit N-Terminal; GIY-YIG Catalytic Domain Protein

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MANYVAFLAVLSGCLSNIQGNMMHPSYVYILASQRNGTLYIGSTSDIINRVWEHKNKVIPGFTAKYNVHMLVYYEMYDLY
IDAARREKRFKNWPRQWKINLIEKFNPEWRDLYEEICQ

Sequences:

>Translated_118_residues
MANYVAFLAVLSGCLSNIQGNMMHPSYVYILASQRNGTLYIGSTSDIINRVWEHKNKVIPGFTAKYNVHMLVYYEMYDLY
IDAARREKRFKNWPRQWKINLIEKFNPEWRDLYEEICQ
>Mature_117_residues
ANYVAFLAVLSGCLSNIQGNMMHPSYVYILASQRNGTLYIGSTSDIINRVWEHKNKVIPGFTAKYNVHMLVYYEMYDLYI
DAARREKRFKNWPRQWKINLIEKFNPEWRDLYEEICQ

Specific function: Unknown

COG id: COG2827

COG function: function code L; Predicted endonuclease containing a URI domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14106; Mature: 13975

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANYVAFLAVLSGCLSNIQGNMMHPSYVYILASQRNGTLYIGSTSDIINRVWEHKNKVIP
CCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEEEECHHHHHHHHHHHCCCCCC
GFTAKYNVHMLVYYEMYDLYIDAARREKRFKNWPRQWKINLIEKFNPEWRDLYEEICQ
CCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCHHEEEHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure 
ANYVAFLAVLSGCLSNIQGNMMHPSYVYILASQRNGTLYIGSTSDIINRVWEHKNKVIP
CHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEEEECHHHHHHHHHHHCCCCCC
GFTAKYNVHMLVYYEMYDLYIDAARREKRFKNWPRQWKINLIEKFNPEWRDLYEEICQ
CCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCHHEEEHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA