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The map label for this gene is ybgF [C]

Identifier: 148359616

GI number: 148359616

Start: 2401815

End: 2402783

Strand: Reverse

Name: ybgF [C]

Synonym: LPC_1528

Alternate gene names: 148359616

Gene position: 2402783-2401815 (Counterclockwise)

Preceding gene: 148359617

Following gene: 148359615

Centisome position: 67.18

GC content: 38.39

Gene sequence:

>969_bases
ATGATTAATTGCAAAAAATCCATTATCACCCTATGTTTTGTACTGATGCTTCCTTTCGCCTTATGGGCAGAAGCGCCAGT
AATAGATGATAGTGAAAATTTTGCAATGATTGACAGGCAAGAGGAGTATGATGCTCCTCTTGTCAATCCCAAGTATGATG
ATCCTCAAATTGAGAATGCTGAGTTGGATGGGCCTCAAAATGATAACTACTCAACCGATACCTCTCAATCCTATGATGAA
CCCGCACTTGTCAAAGAAGACCGAAGCAATATCAGTGACAATGCAAAGTTAATTGATAAAATTCAGCAGCTTCAAAAGGA
AATACAAGAGTTACGTGGCCAGCTTGAAGTACAGGCACACGATTTGAAATTATTACAGCAGCAGCAAGTCGCTTTCTACA
AGGATCTGGATTCTCGATTATCCAATTCTTCAACTTCAGCAAAAACTGTTCAAAATGATAAACCAGCAACAGATATTTCA
TTGGGATCTAATTCACCAGAGACTTTAAAAGTGGCTTCTCCTCAAATCAAAGCAGGATCATCTAATAGTAAACCTCAACC
TGTTGTTGCTGTTTCCAGAGCTAATCCTGCTGATGAACAGATAAGCTATCTGGCTGCATACGAGTTAGTTAAAAATAAAC
GCTATGATGAAGCGATTAAGTCTATGCAGATTTTTGTGCAAAAATATCCCAGAGGTGGTTACACTGCGAATGCAGAGTAC
TGGCTAGGTGAATTATATCTCGTTAAAAAAGACTATTCTAAAGCAATAGAACATTTTGAGATTGTTTTACAGCAATATCC
TTCATCCAGCAAGGCTGCAGCCAGTTTATTAAAATCTGGCTATGCTTATGCCGAGAAAGGTGACAAGCAAGAAGCTAAAA
AGCGTTTTCAACAAGTTGTTAAAACATATCCTGATACACCAACAGCACAACTGGCCAGCTCTAAATTGGAAGCAATTAAT
GCTTTATGA

Upstream 100 bases:

>100_bases
GAGTAGTTAGCTACGGCAAAGAGCGCCCGGCTAATTATGGTCATGATGAAGCGTCGCATGCGCAGAATCGACGCGTAGAG
TTTATTTATGAGGCAACAAG

Downstream 100 bases:

>100_bases
AACGATTTAATGAACAATTAAGAATTACGGAGATTTTTCATTCATTGCAAGGAGAATCAGTAACGGTTGGCTTGCCTACT
GTATTTGTTCGCCTGACAGG

Product: outer membrane protein

Products: NA

Alternate protein names: ORFD [H]

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MINCKKSIITLCFVLMLPFALWAEAPVIDDSENFAMIDRQEEYDAPLVNPKYDDPQIENAELDGPQNDNYSTDTSQSYDE
PALVKEDRSNISDNAKLIDKIQQLQKEIQELRGQLEVQAHDLKLLQQQQVAFYKDLDSRLSNSSTSAKTVQNDKPATDIS
LGSNSPETLKVASPQIKAGSSNSKPQPVVAVSRANPADEQISYLAAYELVKNKRYDEAIKSMQIFVQKYPRGGYTANAEY
WLGELYLVKKDYSKAIEHFEIVLQQYPSSSKAAASLLKSGYAYAEKGDKQEAKKRFQQVVKTYPDTPTAQLASSKLEAIN
AL

Sequences:

>Translated_322_residues
MINCKKSIITLCFVLMLPFALWAEAPVIDDSENFAMIDRQEEYDAPLVNPKYDDPQIENAELDGPQNDNYSTDTSQSYDE
PALVKEDRSNISDNAKLIDKIQQLQKEIQELRGQLEVQAHDLKLLQQQQVAFYKDLDSRLSNSSTSAKTVQNDKPATDIS
LGSNSPETLKVASPQIKAGSSNSKPQPVVAVSRANPADEQISYLAAYELVKNKRYDEAIKSMQIFVQKYPRGGYTANAEY
WLGELYLVKKDYSKAIEHFEIVLQQYPSSSKAAASLLKSGYAYAEKGDKQEAKKRFQQVVKTYPDTPTAQLASSKLEAIN
AL
>Mature_322_residues
MINCKKSIITLCFVLMLPFALWAEAPVIDDSENFAMIDRQEEYDAPLVNPKYDDPQIENAELDGPQNDNYSTDTSQSYDE
PALVKEDRSNISDNAKLIDKIQQLQKEIQELRGQLEVQAHDLKLLQQQQVAFYKDLDSRLSNSSTSAKTVQNDKPATDIS
LGSNSPETLKVASPQIKAGSSNSKPQPVVAVSRANPADEQISYLAAYELVKNKRYDEAIKSMQIFVQKYPRGGYTANAEY
WLGELYLVKKDYSKAIEHFEIVLQQYPSSSKAAASLLKSGYAYAEKGDKQEAKKRFQQVVKTYPDTPTAQLASSKLEAIN
AL

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=216, Percent_Identity=31.9444444444444, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36050; Mature: 36050

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINCKKSIITLCFVLMLPFALWAEAPVIDDSENFAMIDRQEEYDAPLVNPKYDDPQIENA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCCCCC
ELDGPQNDNYSTDTSQSYDEPALVKEDRSNISDNAKLIDKIQQLQKEIQELRGQLEVQAH
CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLKLLQQQQVAFYKDLDSRLSNSSTSAKTVQNDKPATDISLGSNSPETLKVASPQIKAGS
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEECCCCCCCEEEECCCCCCCCC
SNSKPQPVVAVSRANPADEQISYLAAYELVKNKRYDEAIKSMQIFVQKYPRGGYTANAEY
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
WLGELYLVKKDYSKAIEHFEIVLQQYPSSSKAAASLLKSGYAYAEKGDKQEAKKRFQQVV
EEEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHH
KTYPDTPTAQLASSKLEAINAL
HHCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MINCKKSIITLCFVLMLPFALWAEAPVIDDSENFAMIDRQEEYDAPLVNPKYDDPQIENA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCCCCC
ELDGPQNDNYSTDTSQSYDEPALVKEDRSNISDNAKLIDKIQQLQKEIQELRGQLEVQAH
CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLKLLQQQQVAFYKDLDSRLSNSSTSAKTVQNDKPATDISLGSNSPETLKVASPQIKAGS
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEECCCCCCCEEEECCCCCCCCC
SNSKPQPVVAVSRANPADEQISYLAAYELVKNKRYDEAIKSMQIFVQKYPRGGYTANAEY
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
WLGELYLVKKDYSKAIEHFEIVLQQYPSSSKAAASLLKSGYAYAEKGDKQEAKKRFQQVV
EEEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHH
KTYPDTPTAQLASSKLEAINAL
HHCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1766377 [H]