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The map label for this gene is yddE [C]

Identifier: 148359065

GI number: 148359065

Start: 1761513

End: 1762298

Strand: Reverse

Name: yddE [C]

Synonym: LPC_0952

Alternate gene names: 148359065

Gene position: 1762298-1761513 (Counterclockwise)

Preceding gene: 148359066

Following gene: 148359064

Centisome position: 49.27

GC content: 37.79

Gene sequence:

>786_bases
GTGCAGAATATTGAGTTTTATCAAATAGATGCTTTTACGGACAAAGTCTTCCATGGTAATCCGGCTGCGGTTTGTATTCT
CGATGATTGGTTAAATGATGAGCTATTAAAAGCCATTGCTGCGCAAAATAATTTGGCAGAAACCGCTTTTATTATAAAAG
ATGATCAAGATTTTCATATTCGTTGGTTTACTCCTAATGGGGAAATCAATCTATCAGGACATGCAACTTTGGCAGCAGGG
TTTGCTTTACTTGAGTCGAATAAAGGACCTAGTGATTCTATTATTTTTCACCACTCCAGTGGACAGATTTCGGTAGAAAA
GAGAAAGGAAAAGTTTGTTCTGAATTTTCCAAGAATAGGTTATAAGAAAACTCCTTCAGCAGACCCAATTGTATCACTAT
TGGATCAACCTGCTATAGAAGTATTTGAAACAGACCTTGATTATCTGGTTTTACTTGAACATGAGTCACAGATTCGAAAT
TTGCAAATCGATTTGCTTGCTTTAGCAAAACTCCCCAAAAGAGGAATCATTGTGACCTCAACAACAACAGAAGCCGATTT
CTATTCCCGATGTTTTTATCCAAAACACAGCATTGCAGAAGATCCTGTTACCGGCTCAGCACATTGCATATTAGCTCCTT
TTTGGGCAGAAAAACTCAATAAAAACAGCCTATATGCTATCCAGGGATTACACAGAAAAGGGGAGTTATATTGTGAGCTC
CAGAGTAATAGGGTATTGATTTCCGGCCATTGTCGATGGTATCTACGCGGACATTTAGTAATTTAA

Upstream 100 bases:

>100_bases
ATACAGGGACCATAAGAGATATATTGAAGATATATTGATAATTCGACTTAACTTCATCTTTCTTTATCAGTTATAATTTT
AATTTTTATGTGAGCTGATT

Downstream 100 bases:

>100_bases
TAAAATCGATTGAGATGCATTCATCATTGAAGCATAATATAAAACCCATTTAGGAGCCAATGGAGCGTGATAACAATATC
CATTCCAAAAGGAATTCTCT

Product: phenazine biosynthesis PhzF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MQNIEFYQIDAFTDKVFHGNPAAVCILDDWLNDELLKAIAAQNNLAETAFIIKDDQDFHIRWFTPNGEINLSGHATLAAG
FALLESNKGPSDSIIFHHSSGQISVEKRKEKFVLNFPRIGYKKTPSADPIVSLLDQPAIEVFETDLDYLVLLEHESQIRN
LQIDLLALAKLPKRGIIVTSTTTEADFYSRCFYPKHSIAEDPVTGSAHCILAPFWAEKLNKNSLYAIQGLHRKGELYCEL
QSNRVLISGHCRWYLRGHLVI

Sequences:

>Translated_261_residues
MQNIEFYQIDAFTDKVFHGNPAAVCILDDWLNDELLKAIAAQNNLAETAFIIKDDQDFHIRWFTPNGEINLSGHATLAAG
FALLESNKGPSDSIIFHHSSGQISVEKRKEKFVLNFPRIGYKKTPSADPIVSLLDQPAIEVFETDLDYLVLLEHESQIRN
LQIDLLALAKLPKRGIIVTSTTTEADFYSRCFYPKHSIAEDPVTGSAHCILAPFWAEKLNKNSLYAIQGLHRKGELYCEL
QSNRVLISGHCRWYLRGHLVI
>Mature_261_residues
MQNIEFYQIDAFTDKVFHGNPAAVCILDDWLNDELLKAIAAQNNLAETAFIIKDDQDFHIRWFTPNGEINLSGHATLAAG
FALLESNKGPSDSIIFHHSSGQISVEKRKEKFVLNFPRIGYKKTPSADPIVSLLDQPAIEVFETDLDYLVLLEHESQIRN
LQIDLLALAKLPKRGIIVTSTTTEADFYSRCFYPKHSIAEDPVTGSAHCILAPFWAEKLNKNSLYAIQGLHRKGELYCEL
QSNRVLISGHCRWYLRGHLVI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=281, Percent_Identity=36.6548042704626, Blast_Score=143, Evalue=1e-34,
Organism=Homo sapiens, GI74316009, Length=252, Percent_Identity=35.3174603174603, Blast_Score=127, Evalue=1e-29,
Organism=Escherichia coli, GI1787737, Length=302, Percent_Identity=26.8211920529801, Blast_Score=77, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17542160, Length=309, Percent_Identity=32.6860841423948, Blast_Score=135, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17542154, Length=309, Percent_Identity=32.6860841423948, Blast_Score=135, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17542158, Length=308, Percent_Identity=30.1948051948052, Blast_Score=107, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17542152, Length=308, Percent_Identity=30.1948051948052, Blast_Score=107, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6321818, Length=293, Percent_Identity=27.6450511945392, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29495; Mature: 29495

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNIEFYQIDAFTDKVFHGNPAAVCILDDWLNDELLKAIAAQNNLAETAFIIKDDQDFHI
CCCCEEEEEEEEECEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECCCCEEE
RWFTPNGEINLSGHATLAAGFALLESNKGPSDSIIFHHSSGQISVEKRKEKFVLNFPRIG
EEECCCCEEEECCCHHHHHEEEEEECCCCCCCCEEEEECCCEEEEEECCCEEEEECCCCC
YKKTPSADPIVSLLDQPAIEVFETDLDYLVLLEHESQIRNLQIDLLALAKLPKRGIIVTS
CCCCCCCCHHHHHHCCCCCEEECCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCEEEEE
TTTEADFYSRCFYPKHSIAEDPVTGSAHCILAPFWAEKLNKNSLYAIQGLHRKGELYCEL
CCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCEEEEEECCCCCEEEEEE
QSNRVLISGHCRWYLRGHLVI
ECCEEEEECCEEEEEEEEEEC
>Mature Secondary Structure
MQNIEFYQIDAFTDKVFHGNPAAVCILDDWLNDELLKAIAAQNNLAETAFIIKDDQDFHI
CCCCEEEEEEEEECEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECCCCEEE
RWFTPNGEINLSGHATLAAGFALLESNKGPSDSIIFHHSSGQISVEKRKEKFVLNFPRIG
EEECCCCEEEECCCHHHHHEEEEEECCCCCCCCEEEEECCCEEEEEECCCEEEEECCCCC
YKKTPSADPIVSLLDQPAIEVFETDLDYLVLLEHESQIRNLQIDLLALAKLPKRGIIVTS
CCCCCCCCHHHHHHCCCCCEEECCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCEEEEE
TTTEADFYSRCFYPKHSIAEDPVTGSAHCILAPFWAEKLNKNSLYAIQGLHRKGELYCEL
CCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCEEEEEECCCCCEEEEEE
QSNRVLISGHCRWYLRGHLVI
ECCEEEEECCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]