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The map label for this gene is ybeQ [H]

Identifier: 148358886

GI number: 148358886

Start: 1564747

End: 1565877

Strand: Direct

Name: ybeQ [H]

Synonym: LPC_0770

Alternate gene names: 148358886

Gene position: 1564747-1565877 (Clockwise)

Preceding gene: 148358885

Following gene: 148358895

Centisome position: 43.75

GC content: 41.56

Gene sequence:

>1131_bases
ATGCGAGGTTTTTTGTTAGCTCTATTATTGTCGATTAACACTGCTGTTTGGGCCGATGAGTTAGTTGGTTTTGCAGCATT
TGAAAATGGCGACTACACTACAGCCTATCCACATTTAATGCAGGCTGCCAAAGAAGGTAATGAGGAAGCCATGTATTTAT
TGGGACGCATGTATCAATACGGATATGGTGTGACAACTAACTACGAAGAAGCCAGAAATTGGTATCAAAAGGCAGCTGAT
AAGAATAATGCATTGGCTCAATTAAGTTTGGGATTTATGTACGATACAGGTAAGGGGGTATCTCAGGATTTTGCTGAGGC
CTTCAAATGGTATATGAAGGCAGCAGAGCAAGGAAATCCTATAGCACAAAGAAATATCGGATTAATGTATGCCACAGGAG
ATGGTGTAGCTGCCAGTGATGACAAAGCATTCACCTGGTTTAAAAAGGCGGCAGAACAAGGCTATAGCAAGGCACAAGTG
AATTTGGGTTATCAGTACATGATGGGAAAAGGAACTCCAAAAGATGTAAAAAAAGCATTTGAATGGTATCAAAAAGCGGC
AGAGCAGGGGGATGAAAAGGGCGAATACAGTCTAGGTCTATTGTATACAGGCCAGGAAGGTGGGATTAGTGCGGATGATA
AAGCCGCTTTTTACTGGTTTTCACAAGCAGCCAATCATGGACATGTCAACGCACAAACCTATTTGGCTTACTACTATCTT
AAAGGGTATGGTGTAGATGCTGATCCTGTGAAAGCAGCTTATTGGTATCAATCTGCAGCAGAAAAGGGGCAACCTGAAGC
ACAGGCACAATTAGGACAATTGTTATTGACTGGTACAGGTGTTGATAAAGATTACCAACAGGCAGCTTACTGGTTTGGAA
AGTCAGCACATCAGGGAAATCCTGTTGGACAAGCCAAATTGGGGTACATGTATTTAGCAGGATTAGGAGTCAACAAGAGC
TTGGTTAAAGCTTACGCCTGGTTAAAAATTGCTGCTGAAAATAAAAATGAGGAAGCAGCAAAACAACTTAAATCTTTGGA
GGCCAAGTTGACTGAGCCTGAAAAATTGGAAGCAGAGAAAATGATCAAGGATTTGGGCCCATTAGAAAGCAAAGAGAATT
ATGAGGACTAA

Upstream 100 bases:

>100_bases
GAGATTTTTTTAAATTTTTCCACGCGTTAACCGAACAATTACTTGCTTTGTTGCTTCTTTATTCTACGCTTAAATTAAAA
GGAAATAAAATGGAGCAAGT

Downstream 100 bases:

>100_bases
AGTTAAAAACTAAATATAGAAGATACTAGTTGTAACTTAATAATTTGTTGTGTGTTTAAAATACTGGTTTAAATGAGCTA
GTTTAATTGATGAGTAGTCG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MRGFLLALLLSINTAVWADELVGFAAFENGDYTTAYPHLMQAAKEGNEEAMYLLGRMYQYGYGVTTNYEEARNWYQKAAD
KNNALAQLSLGFMYDTGKGVSQDFAEAFKWYMKAAEQGNPIAQRNIGLMYATGDGVAASDDKAFTWFKKAAEQGYSKAQV
NLGYQYMMGKGTPKDVKKAFEWYQKAAEQGDEKGEYSLGLLYTGQEGGISADDKAAFYWFSQAANHGHVNAQTYLAYYYL
KGYGVDADPVKAAYWYQSAAEKGQPEAQAQLGQLLLTGTGVDKDYQQAAYWFGKSAHQGNPVGQAKLGYMYLAGLGVNKS
LVKAYAWLKIAAENKNEEAAKQLKSLEAKLTEPEKLEAEKMIKDLGPLESKENYED

Sequences:

>Translated_376_residues
MRGFLLALLLSINTAVWADELVGFAAFENGDYTTAYPHLMQAAKEGNEEAMYLLGRMYQYGYGVTTNYEEARNWYQKAAD
KNNALAQLSLGFMYDTGKGVSQDFAEAFKWYMKAAEQGNPIAQRNIGLMYATGDGVAASDDKAFTWFKKAAEQGYSKAQV
NLGYQYMMGKGTPKDVKKAFEWYQKAAEQGDEKGEYSLGLLYTGQEGGISADDKAAFYWFSQAANHGHVNAQTYLAYYYL
KGYGVDADPVKAAYWYQSAAEKGQPEAQAQLGQLLLTGTGVDKDYQQAAYWFGKSAHQGNPVGQAKLGYMYLAGLGVNKS
LVKAYAWLKIAAENKNEEAAKQLKSLEAKLTEPEKLEAEKMIKDLGPLESKENYED
>Mature_376_residues
MRGFLLALLLSINTAVWADELVGFAAFENGDYTTAYPHLMQAAKEGNEEAMYLLGRMYQYGYGVTTNYEEARNWYQKAAD
KNNALAQLSLGFMYDTGKGVSQDFAEAFKWYMKAAEQGNPIAQRNIGLMYATGDGVAASDDKAFTWFKKAAEQGYSKAQV
NLGYQYMMGKGTPKDVKKAFEWYQKAAEQGDEKGEYSLGLLYTGQEGGISADDKAAFYWFSQAANHGHVNAQTYLAYYYL
KGYGVDADPVKAAYWYQSAAEKGQPEAQAQLGQLLLTGTGVDKDYQQAAYWFGKSAHQGNPVGQAKLGYMYLAGLGVNKS
LVKAYAWLKIAAENKNEEAAKQLKSLEAKLTEPEKLEAEKMIKDLGPLESKENYED

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI19923669, Length=311, Percent_Identity=29.2604501607717, Blast_Score=118, Evalue=8e-27,
Organism=Homo sapiens, GI151301150, Length=331, Percent_Identity=29.9093655589124, Blast_Score=118, Evalue=9e-27,
Organism=Homo sapiens, GI217330658, Length=173, Percent_Identity=32.3699421965318, Blast_Score=79, Evalue=8e-15,
Organism=Homo sapiens, GI217330656, Length=173, Percent_Identity=32.3699421965318, Blast_Score=79, Evalue=8e-15,
Organism=Homo sapiens, GI154689719, Length=245, Percent_Identity=28.9795918367347, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI33620759, Length=233, Percent_Identity=32.618025751073, Blast_Score=73, Evalue=5e-13,
Organism=Escherichia coli, GI87081769, Length=262, Percent_Identity=38.1679389312977, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1786867, Length=129, Percent_Identity=37.984496124031, Blast_Score=81, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17563256, Length=313, Percent_Identity=27.7955271565495, Blast_Score=111, Evalue=7e-25,
Organism=Saccharomyces cerevisiae, GI6319410, Length=295, Percent_Identity=29.1525423728814, Blast_Score=81, Evalue=3e-16,
Organism=Drosophila melanogaster, GI21355295, Length=314, Percent_Identity=32.1656050955414, Blast_Score=124, Evalue=9e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 41710; Mature: 41710

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGFLLALLLSINTAVWADELVGFAAFENGDYTTAYPHLMQAAKEGNEEAMYLLGRMYQY
CHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
GYGVTTNYEEARNWYQKAADKNNALAQLSLGFMYDTGKGVSQDFAEAFKWYMKAAEQGNP
CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC
IAQRNIGLMYATGDGVAASDDKAFTWFKKAAEQGYSKAQVNLGYQYMMGKGTPKDVKKAF
CHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEEEECCCCHHHHHHHH
EWYQKAAEQGDEKGEYSLGLLYTGQEGGISADDKAAFYWFSQAANHGHVNAQTYLAYYYL
HHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHEEEEHHCCCCCCCCHHHEEEEEEE
KGYGVDADPVKAAYWYQSAAEKGQPEAQAQLGQLLLTGTGVDKDYQQAAYWFGKSAHQGN
ECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHEEEECCCCCHHHHHHHHHHCCCCCCCC
PVGQAKLGYMYLAGLGVNKSLVKAYAWLKIAAENKNEEAAKQLKSLEAKLTEPEKLEAEK
CCCCHHHCEEEEECCCCCHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHH
MIKDLGPLESKENYED
HHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRGFLLALLLSINTAVWADELVGFAAFENGDYTTAYPHLMQAAKEGNEEAMYLLGRMYQY
CHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
GYGVTTNYEEARNWYQKAADKNNALAQLSLGFMYDTGKGVSQDFAEAFKWYMKAAEQGNP
CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC
IAQRNIGLMYATGDGVAASDDKAFTWFKKAAEQGYSKAQVNLGYQYMMGKGTPKDVKKAF
CHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEEEECCCCHHHHHHHH
EWYQKAAEQGDEKGEYSLGLLYTGQEGGISADDKAAFYWFSQAANHGHVNAQTYLAYYYL
HHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHEEEEHHCCCCCCCCHHHEEEEEEE
KGYGVDADPVKAAYWYQSAAEKGQPEAQAQLGQLLLTGTGVDKDYQQAAYWFGKSAHQGN
ECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHEEEECCCCCHHHHHHHHHHCCCCCCCC
PVGQAKLGYMYLAGLGVNKSLVKAYAWLKIAAENKNEEAAKQLKSLEAKLTEPEKLEAEK
CCCCHHHCEEEEECCCCCHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHH
MIKDLGPLESKENYED
HHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]