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The map label for this gene is ygjR [C]

Identifier: 148358853

GI number: 148358853

Start: 1523150

End: 1524178

Strand: Direct

Name: ygjR [C]

Synonym: LPC_0736

Alternate gene names: 148358853

Gene position: 1523150-1524178 (Clockwise)

Preceding gene: 148358850

Following gene: 148358859

Centisome position: 42.59

GC content: 36.73

Gene sequence:

>1029_bases
ATGGATACTGCGACAATAAAGTGGGGAATTTTAGGAACAAGTTTTATCTCTGAAGTGATGGCTAATGCAATTCAGGAATC
AAAAACCAGTGAGCTTGTTGCTATTGGGAGTCGAACAAGCGAGATAGCCAAACGATTTTCTGAAAAATTCGCTATTCCAA
AATTTTATGACAATTATCAATCATTAATTCTTGATAGTGATATAGATGTGGTTTATATAGGGTTGCCTAATCATCTGCAT
AAAGAATGGATTATTCGTTGTGCGCAGGCAGGAAAAAATATTTTGTGTGAAAAACCTTTTGTTATTGGTATAGAAGAAAT
CCATGAGGTTATTTCAGTAATTGAGAGAACAAATGTTTTTTGTATGGAAGCTCTAATGTACCGATATCATCCCTTTATAA
AAAAATTACAAGAGATCATTCAAAGCAACACAATAGGTAAGATAATGTTGTATAATGCGACATACACAGCAAACATTGCA
GAAATAGCCAATCCTGTTGCGGGAGGAAGTATACGTAATCTCGGATGTTACCCAATTTCCTTAGTGAGGCTGCTTGCTAA
CGCAGAGCCAATCGAAATCCGTGGTATTGGAAGAATGAATTCCAGGAATAACACGGATAGTCAAGCCAGCGTTCTTTTAA
AATTTGAAGATGATTCAATTGCAGCAGTTTCCACTGCCGATGATATTGAAATGCATTGGCAATTCGAGGTTTATGGAACA
AAAGGCCATTTAAAAGTAGACACGAATCCTTGGCTGCCTGGCTGTGAGGGTAACAAAATTTATCTCTCTCTCAATACTGA
ATCAACACCCAGAGAAATAAGCGTGAAAGCAGAAAAGTCACTTTATACCTATCAAATAGATTGCATCAATGAGCAAGTAT
TGAAAGAGGATTCCAGACAATTTAGCAAGATGTCTTTATTAGATAGCATGGGAAATACAATCGTTCTGGAAACCTGGCTA
AAACAAATACTCCCTTCAAAACCAAGCCTTGAATTATCCAGATTAAAAGACAGGCTGCCTCATGCATAA

Upstream 100 bases:

>100_bases
TTAGAGCAGGAAATTTAAGTGGTTTTTACTGCTATGGTTTTACTCGTGTCATTTATGCGTTTTAATATACAGTCAGCAAT
TTTTTAGCCGGAAGGAATAT

Downstream 100 bases:

>100_bases
GCAAAATGGTTCTGGTGATGCTAGTCAAATTTTCCGAGAAGAGAGTAATCTGTTTTTCCTTCGCGCCAGATACCATCCCA
ATTGACAGGTGGATTAACTG

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MDTATIKWGILGTSFISEVMANAIQESKTSELVAIGSRTSEIAKRFSEKFAIPKFYDNYQSLILDSDIDVVYIGLPNHLH
KEWIIRCAQAGKNILCEKPFVIGIEEIHEVISVIERTNVFCMEALMYRYHPFIKKLQEIIQSNTIGKIMLYNATYTANIA
EIANPVAGGSIRNLGCYPISLVRLLANAEPIEIRGIGRMNSRNNTDSQASVLLKFEDDSIAAVSTADDIEMHWQFEVYGT
KGHLKVDTNPWLPGCEGNKIYLSLNTESTPREISVKAEKSLYTYQIDCINEQVLKEDSRQFSKMSLLDSMGNTIVLETWL
KQILPSKPSLELSRLKDRLPHA

Sequences:

>Translated_342_residues
MDTATIKWGILGTSFISEVMANAIQESKTSELVAIGSRTSEIAKRFSEKFAIPKFYDNYQSLILDSDIDVVYIGLPNHLH
KEWIIRCAQAGKNILCEKPFVIGIEEIHEVISVIERTNVFCMEALMYRYHPFIKKLQEIIQSNTIGKIMLYNATYTANIA
EIANPVAGGSIRNLGCYPISLVRLLANAEPIEIRGIGRMNSRNNTDSQASVLLKFEDDSIAAVSTADDIEMHWQFEVYGT
KGHLKVDTNPWLPGCEGNKIYLSLNTESTPREISVKAEKSLYTYQIDCINEQVLKEDSRQFSKMSLLDSMGNTIVLETWL
KQILPSKPSLELSRLKDRLPHA
>Mature_342_residues
MDTATIKWGILGTSFISEVMANAIQESKTSELVAIGSRTSEIAKRFSEKFAIPKFYDNYQSLILDSDIDVVYIGLPNHLH
KEWIIRCAQAGKNILCEKPFVIGIEEIHEVISVIERTNVFCMEALMYRYHPFIKKLQEIIQSNTIGKIMLYNATYTANIA
EIANPVAGGSIRNLGCYPISLVRLLANAEPIEIRGIGRMNSRNNTDSQASVLLKFEDDSIAAVSTADDIEMHWQFEVYGT
KGHLKVDTNPWLPGCEGNKIYLSLNTESTPREISVKAEKSLYTYQIDCINEQVLKEDSRQFSKMSLLDSMGNTIVLETWL
KQILPSKPSLELSRLKDRLPHA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=256, Percent_Identity=27.734375, Blast_Score=127, Evalue=1e-29,
Organism=Escherichia coli, GI145693182, Length=226, Percent_Identity=24.7787610619469, Blast_Score=73, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24581115, Length=256, Percent_Identity=27.734375, Blast_Score=114, Evalue=7e-26,
Organism=Drosophila melanogaster, GI24581117, Length=254, Percent_Identity=26.3779527559055, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24584727, Length=251, Percent_Identity=24.3027888446215, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38570; Mature: 38570

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTATIKWGILGTSFISEVMANAIQESKTSELVAIGSRTSEIAKRFSEKFAIPKFYDNYQ
CCCCEEEEECHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHH
SLILDSDIDVVYIGLPNHLHKEWIIRCAQAGKNILCEKPFVIGIEEIHEVISVIERTNVF
HHEEECCCCEEEECCCCHHHHHHHHHHHHCCCCCEECCCCEECHHHHHHHHHHHHHCCHH
CMEALMYRYHPFIKKLQEIIQSNTIGKIMLYNATYTANIAEIANPVAGGSIRNLGCYPIS
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCHHHHCCCCCCCCCCCCCCHHHH
LVRLLANAEPIEIRGIGRMNSRNNTDSQASVLLKFEDDSIAAVSTADDIEMHWQFEVYGT
HHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEEEEEC
KGHLKVDTNPWLPGCEGNKIYLSLNTESTPREISVKAEKSLYTYQIDCINEQVLKEDSRQ
CCEEEECCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEEECCCHHHHHHHHHH
FSKMSLLDSMGNTIVLETWLKQILPSKPSLELSRLKDRLPHA
HHHHHHHHHCCCEEEHHHHHHHHCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MDTATIKWGILGTSFISEVMANAIQESKTSELVAIGSRTSEIAKRFSEKFAIPKFYDNYQ
CCCCEEEEECHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHH
SLILDSDIDVVYIGLPNHLHKEWIIRCAQAGKNILCEKPFVIGIEEIHEVISVIERTNVF
HHEEECCCCEEEECCCCHHHHHHHHHHHHCCCCCEECCCCEECHHHHHHHHHHHHHCCHH
CMEALMYRYHPFIKKLQEIIQSNTIGKIMLYNATYTANIAEIANPVAGGSIRNLGCYPIS
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCHHHHCCCCCCCCCCCCCCHHHH
LVRLLANAEPIEIRGIGRMNSRNNTDSQASVLLKFEDDSIAAVSTADDIEMHWQFEVYGT
HHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEEEEEC
KGHLKVDTNPWLPGCEGNKIYLSLNTESTPREISVKAEKSLYTYQIDCINEQVLKEDSRQ
CCEEEECCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEEECCCHHHHHHHHHH
FSKMSLLDSMGNTIVLETWLKQILPSKPSLELSRLKDRLPHA
HHHHHHHHHCCCEEEHHHHHHHHCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7845353 [H]