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The map label for this gene is slyA [H]

Identifier: 148358795

GI number: 148358795

Start: 1460370

End: 1460789

Strand: Reverse

Name: slyA [H]

Synonym: LPC_0677

Alternate gene names: 148358795

Gene position: 1460789-1460370 (Counterclockwise)

Preceding gene: 148358798

Following gene: 148358791

Centisome position: 40.84

GC content: 34.52

Gene sequence:

>420_bases
ATGTATCTTTCCTCTCTGCTAAAAAAAACAAATCGTTTGTTAATCAAGCGAGCCAATGAATTAATTAAACCCTATGCTAT
GAGTCATGCCTACACTTATATATTAATGGAACTGTATATTGAAGATGGTTTGACACAATCTGAATTAGTTCAATTGATTG
AAGTAGAGCAACCTACCCTTGTAAGAACTTTGGATCGAATGGAAAGAGATGGGTTTATTACTCGAAAACCAAGCTCAATG
GATAGAAGAGCCGTGCATATTTTTCTTACAGAAAAAGCCCGACTTTTGCAAGAAAAAATAGATGAATGCTCCAGAATACT
TAACGACGAGATTCTGGCTGGTTTTTCAGAAGATGAAAAAACAAAATTACAAGAGCTAACTCATCGCGTTCTTGATAATT
TAAGGAATCCCATTGAATAA

Upstream 100 bases:

>100_bases
TGGTAGATTGGTAAGCTTTTCATAAATGTCTCCTAAAACAACTTGCGAATAATAACATAGCCTGTTATTATATAGCAAGC
TATTTAATAATGAGAAATTG

Downstream 100 bases:

>100_bases
TTTATAATGATATTTCTCATCGCTTCATTCTATAGCGTCACCAATGTTGGCTTTACTAATTTTTCAAAATCACTAAAAGA
GAGCTGCATCAATTCCGAAT

Product: MarR family transporter transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MYLSSLLKKTNRLLIKRANELIKPYAMSHAYTYILMELYIEDGLTQSELVQLIEVEQPTLVRTLDRMERDGFITRKPSSM
DRRAVHIFLTEKARLLQEKIDECSRILNDEILAGFSEDEKTKLQELTHRVLDNLRNPIE

Sequences:

>Translated_139_residues
MYLSSLLKKTNRLLIKRANELIKPYAMSHAYTYILMELYIEDGLTQSELVQLIEVEQPTLVRTLDRMERDGFITRKPSSM
DRRAVHIFLTEKARLLQEKIDECSRILNDEILAGFSEDEKTKLQELTHRVLDNLRNPIE
>Mature_139_residues
MYLSSLLKKTNRLLIKRANELIKPYAMSHAYTYILMELYIEDGLTQSELVQLIEVEQPTLVRTLDRMERDGFITRKPSSM
DRRAVHIFLTEKARLLQEKIDECSRILNDEILAGFSEDEKTKLQELTHRVLDNLRNPIE

Specific function: Transcription regulator that can both activate or repress expression [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081950, Length=117, Percent_Identity=35.8974358974359, Blast_Score=63, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16365; Mature: 16365

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLSSLLKKTNRLLIKRANELIKPYAMSHAYTYILMELYIEDGLTQSELVQLIEVEQPTL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHH
VRTLDRMERDGFITRKPSSMDRRAVHIFLTEKARLLQEKIDECSRILNDEILAGFSEDEK
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
TKLQELTHRVLDNLRNPIE
HHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MYLSSLLKKTNRLLIKRANELIKPYAMSHAYTYILMELYIEDGLTQSELVQLIEVEQPTL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHH
VRTLDRMERDGFITRKPSSMDRRAVHIFLTEKARLLQEKIDECSRILNDEILAGFSEDEK
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
TKLQELTHRVLDNLRNPIE
HHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA