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The map label for this gene is capB [H]

Identifier: 148358792

GI number: 148358792

Start: 1455819

End: 1456052

Strand: Direct

Name: capB [H]

Synonym: LPC_0673

Alternate gene names: 148358792

Gene position: 1455819-1456052 (Clockwise)

Preceding gene: 148358790

Following gene: 148358793

Centisome position: 40.71

GC content: 36.32

Gene sequence:

>234_bases
ATGTCGCAAAGAGAAACAGGCCATGTTAAATGGTTTAATGAAAAAAAAGGATTTGGTTTTATTGTTAATCAAAAAGGCGA
AGATATTTTCGTGCATTACAAAGACATTCAGGGAGTTGGTTTTAAAACGCTGCATGAAAATGATCCAGTTACCTTTGAAC
TTGATCGAGGACCTAAGGGTTTGAAAGCACAAAATGTGGTAGTGGCTAGCGAATCAGTACACACAGAAGAATAA

Upstream 100 bases:

>100_bases
GGAGTGATTTATTTTTTCACTTTAAGTTGCGCTAAAGTGAACTTTTATTTATTTAAATAACAATTTTGATGTATCTGTGT
AAGTCAAAGGGGAAATGCGA

Downstream 100 bases:

>100_bases
GCCAGATGATTTTATCTGGTGAGGCTACGCTTTATTTTTTAAAGCCTCGTTAAAGTACTTAAGAGCATGTTTATAGAAAC
CTGAGAGTTTGACATAAAAT

Product: cold shock domain family transporter protein CspA

Products: NA

Alternate protein names: C8.0; Cold acclimation protein B [H]

Number of amino acids: Translated: 77; Mature: 76

Protein sequence:

>77_residues
MSQRETGHVKWFNEKKGFGFIVNQKGEDIFVHYKDIQGVGFKTLHENDPVTFELDRGPKGLKAQNVVVASESVHTEE

Sequences:

>Translated_77_residues
MSQRETGHVKWFNEKKGFGFIVNQKGEDIFVHYKDIQGVGFKTLHENDPVTFELDRGPKGLKAQNVVVASESVHTEE
>Mature_76_residues
SQRETGHVKWFNEKKGFGFIVNQKGEDIFVHYKDIQGVGFKTLHENDPVTFELDRGPKGLKAQNVVVASESVHTEE

Specific function: Affects cell viability at low temperatures [H]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1787834, Length=69, Percent_Identity=53.6231884057971, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI1786841, Length=63, Percent_Identity=55.5555555555556, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI2367114, Length=69, Percent_Identity=50.7246376811594, Blast_Score=69, Evalue=4e-14,
Organism=Escherichia coli, GI1787839, Length=69, Percent_Identity=49.2753623188406, Blast_Score=69, Evalue=6e-14,
Organism=Escherichia coli, GI1788126, Length=63, Percent_Identity=57.1428571428571, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1789979, Length=68, Percent_Identity=50, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=51.5625, Blast_Score=64, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 8760; Mature: 8629

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQRETGHVKWFNEKKGFGFIVNQKGEDIFVHYKDIQGVGFKTLHENDPVTFELDRGPKG
CCCCCCCCEEEECCCCCCEEEEECCCCEEEEEEECCCCCCEEEEECCCCEEEEECCCCCC
LKAQNVVVASESVHTEE
CCCCEEEEECCCCCCCC
>Mature Secondary Structure 
SQRETGHVKWFNEKKGFGFIVNQKGEDIFVHYKDIQGVGFKTLHENDPVTFELDRGPKG
CCCCCCCEEEECCCCCCEEEEECCCCEEEEEEECCCCCCEEEEECCCCEEEEECCCCCC
LKAQNVVVASESVHTEE
CCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9393697 [H]