Click here to switch to the map view.

The map label for this gene is lidL [H]

Identifier: 148358759

GI number: 148358759

Start: 1418202

End: 1419671

Strand: Direct

Name: lidL [H]

Synonym: LPC_0638

Alternate gene names: 148358759

Gene position: 1418202-1419671 (Clockwise)

Preceding gene: 148358758

Following gene: 148358760

Centisome position: 39.65

GC content: 38.44

Gene sequence:

>1470_bases
ATGAAACAATTGGTTGTTGCAGGATTTTTCTTATTACTTCTAACTTCCCCTTTATCAGCGCTGGATGTTGATACCTATCG
TAGTTCACAAAAACAATTCAATACAGAGGATAAGGCGGAACAGGGTGATGCTCAAGCACAGTTTGAATTAGGGCTCCAAT
ATGAAAAGGGTGATGGAGTAAATAAAGATTTAAAGAAAGCAATTTATTGGTATCAGAAAGCTGCAGATCAAGGACAAGCT
GAGGCACAAAATAATCTCGGTGTATTGTATCTTAAAGGAGAGGGTGTGCCCCAAAACAGTCAGCAAGCAATGTATTGGTT
TAAGAAGGCTTCAGAACAGGGTTTGGCAATTGGTCAAAATAATATAGGAATTCTATATGAAAATGGCCTGGGTGTTAAAA
AAGATCTAGGCCAGGCTTTTATCTGGTATCAAAAGGCTGCAGAAGGCGGAAATTCAGACGGACAATATAACCTTGCAGTC
ATGTACATGTATGGCAATGGTATACCAAAAGATATCAAAAAGGCGATTCACTGGTATATCAAAGCAGCAGAGCAAGGAGA
TCTTGATGCTCAAAATAATCTTGGTGTTCTTTATGAGCGAGGCGAAGAGGTTCCAAGAGATTTAAAAGCAGCTATTAGTT
GGTATACCAGAGCAGCAAATGAAGGTTCACTGATTGCTCAAACTAACCTTGGTGTATTGTATATGACTGGTGATCCTTCC
ATTCAAGATGGCAAGAAAGCAATATATTGGTATGAAAAAGCAGCGGCACAAGGTGGGGAAAAAGCTCAAAATAATCTTGG
GTATATTTATGAACAAGGAATTGGTACAGAAAAGGATATGAAAAAGGCTATTTACTGGTACGAAAAAGCCGCAGAGAATG
GATTTACTCTGGCTCAAAATAATTTAGGTGTTCTCTATTCAAATGATGGCGAGCTGCAAGATTACAAAAAGGCTTATTTA
TGGTTCAAAAAAGCCGCAGATCAAGGATTTGCCGAAGCCCAAAATAACTTGGGTTTAATGTATATGAAAGGCAATGGATT
GTCAGTTAATTATCACGAAGCAGTCTTGTGGTACAAGAGAGCGGCAGAACAAGGATTACCTTTAGCGCAACATAATCTGG
CGATTATGTATATGAAAGGGTTGGGGATAAAGAAAGACAATAAGCTGGCCATTAAATGGTACCAAAAAGCTGCTGAAAAA
GGATTGGATTTGGCGCAAAACAATTTGGCGGTTATGTATATACGAGGCGAAGGAGTGAAAAGAGATTTTAAGAAGGCCAT
GTATTGGTATCAAAAGGCAGCTGAACAAGGTTTGGATTTGGCACAAATTAATCTGGGTATTATGTATCTTGATGGCATGG
GTGTTAATAAAGATTTCGCTAAAGCAAAATACTGGATAGGAAAAGCCAAGGATAGTGGTTCTCAAGATGCGCTGACCATA
TGGAAAAAAAATAAATTGTGGAAATATTAG

Upstream 100 bases:

>100_bases
TTACTCCTAATAGGTGCACTTTGCTTGTATGGCACCAGAGCGTTAATGTTTATTCATCATCAATTGTGCTATAATTGAAC
AATGATTGCAGGGAGGTATG

Downstream 100 bases:

>100_bases
TGATCATTGTTGTGGGTCTTGGTTGATGTATTGCGCAAAATGATCAAGTCTGGTTATATAATTAAAATACGCTGAATAAT
CTAATGGATTAGAAAAGGAT

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MKQLVVAGFFLLLLTSPLSALDVDTYRSSQKQFNTEDKAEQGDAQAQFELGLQYEKGDGVNKDLKKAIYWYQKAADQGQA
EAQNNLGVLYLKGEGVPQNSQQAMYWFKKASEQGLAIGQNNIGILYENGLGVKKDLGQAFIWYQKAAEGGNSDGQYNLAV
MYMYGNGIPKDIKKAIHWYIKAAEQGDLDAQNNLGVLYERGEEVPRDLKAAISWYTRAANEGSLIAQTNLGVLYMTGDPS
IQDGKKAIYWYEKAAAQGGEKAQNNLGYIYEQGIGTEKDMKKAIYWYEKAAENGFTLAQNNLGVLYSNDGELQDYKKAYL
WFKKAADQGFAEAQNNLGLMYMKGNGLSVNYHEAVLWYKRAAEQGLPLAQHNLAIMYMKGLGIKKDNKLAIKWYQKAAEK
GLDLAQNNLAVMYIRGEGVKRDFKKAMYWYQKAAEQGLDLAQINLGIMYLDGMGVNKDFAKAKYWIGKAKDSGSQDALTI
WKKNKLWKY

Sequences:

>Translated_489_residues
MKQLVVAGFFLLLLTSPLSALDVDTYRSSQKQFNTEDKAEQGDAQAQFELGLQYEKGDGVNKDLKKAIYWYQKAADQGQA
EAQNNLGVLYLKGEGVPQNSQQAMYWFKKASEQGLAIGQNNIGILYENGLGVKKDLGQAFIWYQKAAEGGNSDGQYNLAV
MYMYGNGIPKDIKKAIHWYIKAAEQGDLDAQNNLGVLYERGEEVPRDLKAAISWYTRAANEGSLIAQTNLGVLYMTGDPS
IQDGKKAIYWYEKAAAQGGEKAQNNLGYIYEQGIGTEKDMKKAIYWYEKAAENGFTLAQNNLGVLYSNDGELQDYKKAYL
WFKKAADQGFAEAQNNLGLMYMKGNGLSVNYHEAVLWYKRAAEQGLPLAQHNLAIMYMKGLGIKKDNKLAIKWYQKAAEK
GLDLAQNNLAVMYIRGEGVKRDFKKAMYWYQKAAEQGLDLAQINLGIMYLDGMGVNKDFAKAKYWIGKAKDSGSQDALTI
WKKNKLWKY
>Mature_489_residues
MKQLVVAGFFLLLLTSPLSALDVDTYRSSQKQFNTEDKAEQGDAQAQFELGLQYEKGDGVNKDLKKAIYWYQKAADQGQA
EAQNNLGVLYLKGEGVPQNSQQAMYWFKKASEQGLAIGQNNIGILYENGLGVKKDLGQAFIWYQKAAEGGNSDGQYNLAV
MYMYGNGIPKDIKKAIHWYIKAAEQGDLDAQNNLGVLYERGEEVPRDLKAAISWYTRAANEGSLIAQTNLGVLYMTGDPS
IQDGKKAIYWYEKAAAQGGEKAQNNLGYIYEQGIGTEKDMKKAIYWYEKAAENGFTLAQNNLGVLYSNDGELQDYKKAYL
WFKKAADQGFAEAQNNLGLMYMKGNGLSVNYHEAVLWYKRAAEQGLPLAQHNLAIMYMKGLGIKKDNKLAIKWYQKAAEK
GLDLAQNNLAVMYIRGEGVKRDFKKAMYWYQKAAEQGLDLAQINLGIMYLDGMGVNKDFAKAKYWIGKAKDSGSQDALTI
WKKNKLWKY

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI19923669, Length=377, Percent_Identity=32.6259946949602, Blast_Score=153, Evalue=4e-37,
Organism=Homo sapiens, GI151301150, Length=394, Percent_Identity=30.2030456852792, Blast_Score=142, Evalue=8e-34,
Organism=Homo sapiens, GI217330658, Length=177, Percent_Identity=34.4632768361582, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI217330656, Length=177, Percent_Identity=34.4632768361582, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI154689719, Length=261, Percent_Identity=30.2681992337165, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI33620759, Length=180, Percent_Identity=30.5555555555556, Blast_Score=77, Evalue=3e-14,
Organism=Escherichia coli, GI87081769, Length=321, Percent_Identity=37.6947040498442, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1786867, Length=99, Percent_Identity=42.4242424242424, Blast_Score=82, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17563256, Length=411, Percent_Identity=28.4671532846715, Blast_Score=133, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6319410, Length=290, Percent_Identity=30.6896551724138, Blast_Score=92, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6319998, Length=280, Percent_Identity=31.4285714285714, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21355295, Length=345, Percent_Identity=34.2028985507246, Blast_Score=153, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 54894; Mature: 54894

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLVVAGFFLLLLTSPLSALDVDTYRSSQKQFNTEDKAEQGDAQAQFELGLQYEKGDGV
CCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCCCHHHHCCCCCEEEEEEEEEECCCCC
NKDLKKAIYWYQKAADQGQAEAQNNLGVLYLKGEGVPQNSQQAMYWFKKASEQGLAIGQN
CHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCEECCC
NIGILYENGLGVKKDLGQAFIWYQKAAEGGNSDGQYNLAVMYMYGNGIPKDIKKAIHWYI
CEEEEEECCCCCHHHHHHHHEEEHHHHCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHH
KAAEQGDLDAQNNLGVLYERGEEVPRDLKAAISWYTRAANEGSLIAQTNLGVLYMTGDPS
EECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCC
IQDGKKAIYWYEKAAAQGGEKAQNNLGYIYEQGIGTEKDMKKAIYWYEKAAENGFTLAQN
CCCCCEEEEEEEHHHHCCCCHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEC
NLGVLYSNDGELQDYKKAYLWFKKAADQGFAEAQNNLGLMYMKGNGLSVNYHEAVLWYKR
CEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEECCCCCEEEHHHHHHHHHH
AAEQGLPLAQHNLAIMYMKGLGIKKDNKLAIKWYQKAAEKGLDLAQNNLAVMYIRGEGVK
HHHCCCCCCCCCEEEEEEECCCCCCCCCEEHHHHHHHHHCCCCCCCCCEEEEEEECCCCH
RDFKKAMYWYQKAAEQGLDLAQINLGIMYLDGMGVNKDFAKAKYWIGKAKDSGSQDALTI
HHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCHHHHHHHHEEECCCCCCCCCEEEE
WKKNKLWKY
EECCCCCCC
>Mature Secondary Structure
MKQLVVAGFFLLLLTSPLSALDVDTYRSSQKQFNTEDKAEQGDAQAQFELGLQYEKGDGV
CCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCCCHHHHCCCCCEEEEEEEEEECCCCC
NKDLKKAIYWYQKAADQGQAEAQNNLGVLYLKGEGVPQNSQQAMYWFKKASEQGLAIGQN
CHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCEECCC
NIGILYENGLGVKKDLGQAFIWYQKAAEGGNSDGQYNLAVMYMYGNGIPKDIKKAIHWYI
CEEEEEECCCCCHHHHHHHHEEEHHHHCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHH
KAAEQGDLDAQNNLGVLYERGEEVPRDLKAAISWYTRAANEGSLIAQTNLGVLYMTGDPS
EECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCC
IQDGKKAIYWYEKAAAQGGEKAQNNLGYIYEQGIGTEKDMKKAIYWYEKAAENGFTLAQN
CCCCCEEEEEEEHHHHCCCCHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEC
NLGVLYSNDGELQDYKKAYLWFKKAADQGFAEAQNNLGLMYMKGNGLSVNYHEAVLWYKR
CEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEECCCCCEEEHHHHHHHHHH
AAEQGLPLAQHNLAIMYMKGLGIKKDNKLAIKWYQKAAEKGLDLAQNNLAVMYIRGEGVK
HHHCCCCCCCCCEEEEEEECCCCCCCCCEEHHHHHHHHHCCCCCCCCCEEEEEEECCCCH
RDFKKAMYWYQKAAEQGLDLAQINLGIMYLDGMGVNKDFAKAKYWIGKAKDSGSQDALTI
HHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCHHHHHHHHEEECCCCCCCCCEEEE
WKKNKLWKY
EECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]