Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 148358754

GI number: 148358754

Start: 1412610

End: 1414916

Strand: Reverse

Name: yciR [C]

Synonym: LPC_0633

Alternate gene names: 148358754

Gene position: 1414916-1412610 (Counterclockwise)

Preceding gene: 148358756

Following gene: 148358752

Centisome position: 39.56

GC content: 34.42

Gene sequence:

>2307_bases
ATGCTAATTTTAAAATATAAGAATTTTGAGATACAAAAAATGGATAATTCATTTGTATTCAATGAAACCACTCTAAAACG
TGTACCCCATTTTTTGGTATTGATTATTATTTTACTGTTAGGTCTGCCTTACATAGGTCTAAACTGGGGTTTAGACTTCA
GTAATTTAGCCATTACAATAAATGATGGGAAAATAGTAGGCTCCCAACTCATTGAATCTCAAATTCGCGGTTACTTCCGA
CAAACTCTCTTACAATGGTCTGGATTTTCTCTTGCTGCAGTGACGGTATTATTAGCATTTACTCAATATCGATTAAGTAA
TGATAAAATTGCTTTAATTATTGGCCTTGCCATTCTATTCTCTGGCTCCATTGAAGCGCTGCATACCTTGGTTATTGATG
GCCTGGCTTTGCAAGGTCCCGAAAAAAATAACCTGGATGCTTTAATTTGGGTTTTTTCAAACAGTGTTAGCGGTTTAATT
CTAATGACTGGGCTTTCTTTACTGGTACATGCAGGCGCTAATAAACCAGTGAGATTGGTGACTTTTATTCTACTGACTAC
TTTTTTGGTCTTGGCTGCTATCGCAGTCATTTATTATGCCGCTGTAATAATACAAATTCCTGATATGTGGCTTTATGATT
CTTATGTTTCCAGACCTTTTGAACTCATATCTGTCTTTATCTATCTTATGTTGATGATTATTGTTTACCCAAAAATCTAT
GCATCTTACCCGACTATTTTATCTGATTCTGTATTCTATATGTCACTCACCCAAGTCGTGTTGGCTATCTACATCATGTT
ATTATCAACAACTCCGTATGACAGTGCCTTTAATATAGCATATTTTCTTAAAGTGGTTGTTTATTTTATACCTTGCACCT
GTTTTGTAATTAATTACGTTTTTTCATACTCAGCGGTACTGGAAGGGCAAAAAAACTTAAAAATAAAACAGGAAGAGTTA
AAATATATGGCCTCTCATGATCCTCTGACAAACCTGTTTAATCGCAGGGAATTTGAAGACTTGCTTGATAAATCCATTGC
TAATGCCCAAAGAAATAACTCTTCCCTGGCTTTACTGCTTATTGATTTAGATAATTTCAAGGCAATAAATGACACATTTG
GTCATTTTCATGGCGATGAACTTTTAAAACAATTTGCCAATCGCCTGGTTTTACTAGTTCGAAAAGGTGATCTTTTATCC
AGAGTGGGTGGAGATGAATTTACATTAATCTCTCTGAATATAGAATCCCCTTCCAGCGCACGGCATCTGGCAGAACGAAT
TTTAAATGAATTAATCAGTCCCTATACTATCAATGGCAAATTAATCACAGTAACGGTCAGTATTGGAATATCCATTTTCC
CTGATGATGGAAATACTACAGAAGATCTGTTAAGAAAAGCGGACTTGGCTATGTATAAAGCAAAAAACTCAGGGAAAAAT
ACCTATCAATTTTATACTGAACAACTAGGTTATTCACAGCATAGGGAATCCGAGCTGGAATCTCATCTTCGAAAAGCATT
ACAAAATGATGAATTTGAACTTTATTACCAACCCAAATTTAATCTGATTAATATGGAGATTATTGGCGCAGAAATCCTTT
TACGCTGGAATAATAAAGCCCTGGGAGGCGTGTCTCCTAATGAGTTTATACCAGTAGCAGAAAACACGGGATTAATAACA
GAACTGAGTCAATGGGTTTTACAAAAATCCTGCATACAAATAATGCACTGGGCTAATCAATACAACAAGATGCTTTCCTT
TTCCATTAATATTTCGCCTGTTCAATTAACAAATCCACAATTTCCTAAAATTCTTGAAAAAATACTACAGGAATATCAAT
ACCCTGCAGAATATCTCGAGCTTGAAATTACTGAAAACACTTTAATGGGGGATCAAGATGAAATCTCCAAAATGCTTAAT
GTAATTTCTGACTTGGGAATAAAGTTGTCATTGGATGATTTTGGCAAGGAATACTCTTCTCTTAACAGATTAAAAACTCT
CCCTATTGACAGCTTAAAAATTGATAAAACATTTATCTCTGATATACACAACGAACATGAGAAAGTAGTCATTATAGACA
TTATTATTAAATTGGCTAATGAGTTAGGAATGAGTATTGTTGCCGAGGGTATTGAAACCATACCTCAATTAAAATATCTT
GTGTCAAGAAAATGTCATTTTGGTCAAGGCTTCCTCCTGAGTAAGCCCTTAACTGTAAATGAGTTCACTTCAATTGCTTA
TACCAAGTTGGGAAAAACCAAATCTAACGCAAAAGTCATTTCATTAATTAACAATAACAGATTTTAA

Upstream 100 bases:

>100_bases
TTTTCATATAGCCCAGACTTAAAATATTTCTGGTAAATACGAGGATGCCCAGGTTAACAGGATATAAAATCAGCAATTTT
GCCACTAACAGGCACATTTT

Downstream 100 bases:

>100_bases
TTAGAACCATATACTTGATCTTTCAAGGAGAATTTCTTATAGATGCTGTACATTTTACGTGATATCGTTCATTTAAGGAT
ATAAAAGGCTTTTCTTTGCC

Product: sensory box protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 768; Mature: 768

Protein sequence:

>768_residues
MLILKYKNFEIQKMDNSFVFNETTLKRVPHFLVLIIILLLGLPYIGLNWGLDFSNLAITINDGKIVGSQLIESQIRGYFR
QTLLQWSGFSLAAVTVLLAFTQYRLSNDKIALIIGLAILFSGSIEALHTLVIDGLALQGPEKNNLDALIWVFSNSVSGLI
LMTGLSLLVHAGANKPVRLVTFILLTTFLVLAAIAVIYYAAVIIQIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIY
ASYPTILSDSVFYMSLTQVVLAIYIMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYVFSYSAVLEGQKNLKIKQEEL
KYMASHDPLTNLFNRREFEDLLDKSIANAQRNNSSLALLLIDLDNFKAINDTFGHFHGDELLKQFANRLVLLVRKGDLLS
RVGGDEFTLISLNIESPSSARHLAERILNELISPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKN
TYQFYTEQLGYSQHRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNKALGGVSPNEFIPVAENTGLIT
ELSQWVLQKSCIQIMHWANQYNKMLSFSINISPVQLTNPQFPKILEKILQEYQYPAEYLELEITENTLMGDQDEISKMLN
VISDLGIKLSLDDFGKEYSSLNRLKTLPIDSLKIDKTFISDIHNEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYL
VSRKCHFGQGFLLSKPLTVNEFTSIAYTKLGKTKSNAKVISLINNNRF

Sequences:

>Translated_768_residues
MLILKYKNFEIQKMDNSFVFNETTLKRVPHFLVLIIILLLGLPYIGLNWGLDFSNLAITINDGKIVGSQLIESQIRGYFR
QTLLQWSGFSLAAVTVLLAFTQYRLSNDKIALIIGLAILFSGSIEALHTLVIDGLALQGPEKNNLDALIWVFSNSVSGLI
LMTGLSLLVHAGANKPVRLVTFILLTTFLVLAAIAVIYYAAVIIQIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIY
ASYPTILSDSVFYMSLTQVVLAIYIMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYVFSYSAVLEGQKNLKIKQEEL
KYMASHDPLTNLFNRREFEDLLDKSIANAQRNNSSLALLLIDLDNFKAINDTFGHFHGDELLKQFANRLVLLVRKGDLLS
RVGGDEFTLISLNIESPSSARHLAERILNELISPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKN
TYQFYTEQLGYSQHRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNKALGGVSPNEFIPVAENTGLIT
ELSQWVLQKSCIQIMHWANQYNKMLSFSINISPVQLTNPQFPKILEKILQEYQYPAEYLELEITENTLMGDQDEISKMLN
VISDLGIKLSLDDFGKEYSSLNRLKTLPIDSLKIDKTFISDIHNEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYL
VSRKCHFGQGFLLSKPLTVNEFTSIAYTKLGKTKSNAKVISLINNNRF
>Mature_768_residues
MLILKYKNFEIQKMDNSFVFNETTLKRVPHFLVLIIILLLGLPYIGLNWGLDFSNLAITINDGKIVGSQLIESQIRGYFR
QTLLQWSGFSLAAVTVLLAFTQYRLSNDKIALIIGLAILFSGSIEALHTLVIDGLALQGPEKNNLDALIWVFSNSVSGLI
LMTGLSLLVHAGANKPVRLVTFILLTTFLVLAAIAVIYYAAVIIQIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIY
ASYPTILSDSVFYMSLTQVVLAIYIMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYVFSYSAVLEGQKNLKIKQEEL
KYMASHDPLTNLFNRREFEDLLDKSIANAQRNNSSLALLLIDLDNFKAINDTFGHFHGDELLKQFANRLVLLVRKGDLLS
RVGGDEFTLISLNIESPSSARHLAERILNELISPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKN
TYQFYTEQLGYSQHRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNKALGGVSPNEFIPVAENTGLIT
ELSQWVLQKSCIQIMHWANQYNKMLSFSINISPVQLTNPQFPKILEKILQEYQYPAEYLELEITENTLMGDQDEISKMLN
VISDLGIKLSLDDFGKEYSSLNRLKTLPIDSLKIDKTFISDIHNEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYL
VSRKCHFGQGFLLSKPLTVNEFTSIAYTKLGKTKSNAKVISLINNNRF

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=427, Percent_Identity=33.9578454332553, Blast_Score=265, Evalue=1e-71,
Organism=Escherichia coli, GI87081921, Length=429, Percent_Identity=30.5361305361305, Blast_Score=226, Evalue=5e-60,
Organism=Escherichia coli, GI226510982, Length=437, Percent_Identity=29.0617848970252, Blast_Score=188, Evalue=1e-48,
Organism=Escherichia coli, GI87081980, Length=265, Percent_Identity=35.0943396226415, Blast_Score=146, Evalue=5e-36,
Organism=Escherichia coli, GI87081845, Length=256, Percent_Identity=33.203125, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI87081743, Length=248, Percent_Identity=34.2741935483871, Blast_Score=140, Evalue=4e-34,
Organism=Escherichia coli, GI1788502, Length=243, Percent_Identity=32.9218106995885, Blast_Score=137, Evalue=4e-33,
Organism=Escherichia coli, GI1788381, Length=441, Percent_Identity=27.891156462585, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=30.7053941908714, Blast_Score=132, Evalue=7e-32,
Organism=Escherichia coli, GI1786507, Length=246, Percent_Identity=31.3008130081301, Blast_Score=130, Evalue=4e-31,
Organism=Escherichia coli, GI1787055, Length=253, Percent_Identity=31.6205533596838, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1788849, Length=462, Percent_Identity=25.5411255411255, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=36.144578313253, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87082096, Length=473, Percent_Identity=25.369978858351, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=37.3493975903614, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=40.1162790697674, Blast_Score=103, Evalue=5e-23,
Organism=Escherichia coli, GI145693134, Length=178, Percent_Identity=37.0786516853933, Blast_Score=102, Evalue=9e-23,
Organism=Escherichia coli, GI1788956, Length=170, Percent_Identity=35.8823529411765, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI87082007, Length=176, Percent_Identity=36.3636363636364, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=37.1794871794872, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1787802, Length=238, Percent_Identity=30.2521008403361, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1789650, Length=432, Percent_Identity=20.6018518518519, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=33.9393939393939, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1788085, Length=165, Percent_Identity=30.3030303030303, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI87081974, Length=157, Percent_Identity=31.8471337579618, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787410, Length=259, Percent_Identity=25.8687258687259, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 87024; Mature: 87024

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILKYKNFEIQKMDNSFVFNETTLKRVPHFLVLIIILLLGLPYIGLNWGLDFSNLAITI
CEEEEECCCEEEECCCCEEECHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEE
NDGKIVGSQLIESQIRGYFRQTLLQWSGFSLAAVTVLLAFTQYRLSNDKIALIIGLAILF
ECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHH
SGSIEALHTLVIDGLALQGPEKNNLDALIWVFSNSVSGLILMTGLSLLVHAGANKPVRLV
CCCHHHHHHHHHHCCEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHH
TFILLTTFLVLAAIAVIYYAAVIIQIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
ASYPTILSDSVFYMSLTQVVLAIYIMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYV
HCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FSYSAVLEGQKNLKIKQEELKYMASHDPLTNLFNRREFEDLLDKSIANAQRNNSSLALLL
HHHHHHHCCCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
IDLDNFKAINDTFGHFHGDELLKQFANRLVLLVRKGDLLSRVGGDEFTLISLNIESPSSA
EECCCCCCHHHHHCCCCHHHHHHHHHHHHEEEEECCCHHHHCCCCCEEEEEEEECCCCHH
RHLAERILNELISPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKN
HHHHHHHHHHHCCCEEECCEEEEEEEEECEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
TYQFYTEQLGYSQHRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNKA
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEEEEEEEECCCC
LGGVSPNEFIPVAENTGLITELSQWVLQKSCIQIMHWANQYNKMLSFSINISPVQLTNPQ
CCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCCC
FPKILEKILQEYQYPAEYLELEITENTLMGDQDEISKMLNVISDLGIKLSLDDFGKEYSS
HHHHHHHHHHHHCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHH
LNRLKTLPIDSLKIDKTFISDIHNEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYL
HHHHCCCCCCCEEEHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSRKCHFGQGFLLSKPLTVNEFTSIAYTKLGKTKSNAKVISLINNNRF
HHCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
>Mature Secondary Structure
MLILKYKNFEIQKMDNSFVFNETTLKRVPHFLVLIIILLLGLPYIGLNWGLDFSNLAITI
CEEEEECCCEEEECCCCEEECHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEE
NDGKIVGSQLIESQIRGYFRQTLLQWSGFSLAAVTVLLAFTQYRLSNDKIALIIGLAILF
ECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHH
SGSIEALHTLVIDGLALQGPEKNNLDALIWVFSNSVSGLILMTGLSLLVHAGANKPVRLV
CCCHHHHHHHHHHCCEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHH
TFILLTTFLVLAAIAVIYYAAVIIQIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
ASYPTILSDSVFYMSLTQVVLAIYIMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYV
HCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FSYSAVLEGQKNLKIKQEELKYMASHDPLTNLFNRREFEDLLDKSIANAQRNNSSLALLL
HHHHHHHCCCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
IDLDNFKAINDTFGHFHGDELLKQFANRLVLLVRKGDLLSRVGGDEFTLISLNIESPSSA
EECCCCCCHHHHHCCCCHHHHHHHHHHHHEEEEECCCHHHHCCCCCEEEEEEEECCCCHH
RHLAERILNELISPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKN
HHHHHHHHHHHCCCEEECCEEEEEEEEECEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
TYQFYTEQLGYSQHRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNKA
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEEEEEEEECCCC
LGGVSPNEFIPVAENTGLITELSQWVLQKSCIQIMHWANQYNKMLSFSINISPVQLTNPQ
CCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCCC
FPKILEKILQEYQYPAEYLELEITENTLMGDQDEISKMLNVISDLGIKLSLDDFGKEYSS
HHHHHHHHHHHHCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHH
LNRLKTLPIDSLKIDKTFISDIHNEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYL
HHHHCCCCCCCEEEHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSRKCHFGQGFLLSKPLTVNEFTSIAYTKLGKTKSNAKVISLINNNRF
HHCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]