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The map label for this gene is yhcM [H]

Identifier: 148358606

GI number: 148358606

Start: 3183323

End: 3184405

Strand: Reverse

Name: yhcM [H]

Synonym: LPC_0480

Alternate gene names: 148358606

Gene position: 3184405-3183323 (Counterclockwise)

Preceding gene: 148358605

Following gene: 148358607

Centisome position: 89.04

GC content: 37.4

Gene sequence:

>1083_bases
ATGAGTTTGATTGAGCAGTATGAAGCCGCGATTTATAGAGGTGAAATAGATAGCGATCCTGAGCAGAGAGAAATCCTTGA
ACACATGCAGAGGCTTGCTGAGGATTTACAGAAGAAGAATGACTCTTGGTTTCCCTGGAGAAAAAAGCATCCCATTAAAG
GGCTTTATATCTATGGGCCTGTGGGAGTTGGCAAGACTTATTTGGTGGATTTGTTTTATCAGCATATTGATGAGGAAAAA
AAGGCGAGATTTCATTTTCATCATTTTATGCAGCAAATTGACGCTCAATTAAGACGATTACAAGGCAAAAAAAATCCTTT
GCAGTATATCGCCAAAGAAATGGCCAAATCGATTCGTTTACTGTGTTTTGATGAGTTTTTAGTTCACGATGTGGCTTATG
CAATGATTTTGGCTGAATTATTACAAGCACTGCATCACTACGGCGTTGTTTTGGTTATCTCTTCGAATACTCACCCGGAT
GAGTTGTATTTAAATGGGGTACATAGAGAGAGATTTATTCCGGCTATCGAGATTATTAAAAAAGATTGTGAGGTTCTGAA
TCTTAATCAAAAACGAGATTATCGTTTAGGTCGACAACCCTTGTTAGAGGCTTATTTATATCCTTTAAATGAACAAATAC
AAGAAGCAATGGAAAAACAGTTTGCTCTAATAACCCGGGAAGAAGACTGCAAAGGTTTTATAACAGTACAAAATCGTGAT
ATTCCATATATTAAATACGGGGCACGGTCTATTTGGTTTGCTTTTGATGTGATTTGTAATTTTCCTCGTAGCCAATTGGA
TTATTTAGAAATTGCTGATCGCTTTGATAATGTCTTCCTGAGTGATGTTTATCAGCTTACTGAAAGTCATACAGCACAAG
CGATTATGTTTATTCACTTTATAGATGTTATGTATGATAGGGGCATTAAGCTCATTATCTCAGCGGATGTTCCTGCAGAA
GAATTGTACGTTAAAGGTGAAATGAAGGAAACGTTTAAAAGAACGTTGAGCCGTCTAATTGAGATGCAATCGGTAGACTA
TCTGAGTCGTCATCCTCGGCGTTTGGTAAAGGAAATGCTGTAA

Upstream 100 bases:

>100_bases
CAGTCATTGAATTTGTTGAAACGGGTCATTTTTTTCATGGTAAGCTGTTAATATTAAAAGAAAAGTTGATGAATGCTATT
CGTGATCAGGTTTGCCTGCC

Downstream 100 bases:

>100_bases
TGTGGTATAAAATTTCTTAATTGAGAATGATTCTCGATATCGTTTGTGTTAAAATTAATTAAATGAATCACCGTATTGTT
TATATATTATGCAGATTAGT

Product: ATPase N2B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MSLIEQYEAAIYRGEIDSDPEQREILEHMQRLAEDLQKKNDSWFPWRKKHPIKGLYIYGPVGVGKTYLVDLFYQHIDEEK
KARFHFHHFMQQIDAQLRRLQGKKNPLQYIAKEMAKSIRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVISSNTHPD
ELYLNGVHRERFIPAIEIIKKDCEVLNLNQKRDYRLGRQPLLEAYLYPLNEQIQEAMEKQFALITREEDCKGFITVQNRD
IPYIKYGARSIWFAFDVICNFPRSQLDYLEIADRFDNVFLSDVYQLTESHTAQAIMFIHFIDVMYDRGIKLIISADVPAE
ELYVKGEMKETFKRTLSRLIEMQSVDYLSRHPRRLVKEML

Sequences:

>Translated_360_residues
MSLIEQYEAAIYRGEIDSDPEQREILEHMQRLAEDLQKKNDSWFPWRKKHPIKGLYIYGPVGVGKTYLVDLFYQHIDEEK
KARFHFHHFMQQIDAQLRRLQGKKNPLQYIAKEMAKSIRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVISSNTHPD
ELYLNGVHRERFIPAIEIIKKDCEVLNLNQKRDYRLGRQPLLEAYLYPLNEQIQEAMEKQFALITREEDCKGFITVQNRD
IPYIKYGARSIWFAFDVICNFPRSQLDYLEIADRFDNVFLSDVYQLTESHTAQAIMFIHFIDVMYDRGIKLIISADVPAE
ELYVKGEMKETFKRTLSRLIEMQSVDYLSRHPRRLVKEML
>Mature_359_residues
SLIEQYEAAIYRGEIDSDPEQREILEHMQRLAEDLQKKNDSWFPWRKKHPIKGLYIYGPVGVGKTYLVDLFYQHIDEEKK
ARFHFHHFMQQIDAQLRRLQGKKNPLQYIAKEMAKSIRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVISSNTHPDE
LYLNGVHRERFIPAIEIIKKDCEVLNLNQKRDYRLGRQPLLEAYLYPLNEQIQEAMEKQFALITREEDCKGFITVQNRDI
PYIKYGARSIWFAFDVICNFPRSQLDYLEIADRFDNVFLSDVYQLTESHTAQAIMFIHFIDVMYDRGIKLIISADVPAEE
LYVKGEMKETFKRTLSRLIEMQSVDYLSRHPRRLVKEML

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=403, Percent_Identity=31.2655086848635, Blast_Score=199, Evalue=4e-51,
Organism=Escherichia coli, GI1789627, Length=341, Percent_Identity=38.7096774193548, Blast_Score=245, Evalue=4e-66,
Organism=Caenorhabditis elegans, GI17505769, Length=355, Percent_Identity=29.2957746478873, Blast_Score=151, Evalue=4e-37,
Organism=Saccharomyces cerevisiae, GI6320783, Length=317, Percent_Identity=35.9621451104101, Blast_Score=171, Evalue=1e-43,
Organism=Drosophila melanogaster, GI20129913, Length=422, Percent_Identity=28.1990521327014, Blast_Score=166, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42715; Mature: 42584

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIEQYEAAIYRGEIDSDPEQREILEHMQRLAEDLQKKNDSWFPWRKKHPIKGLYIYGP
CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC
VGVGKTYLVDLFYQHIDEEKKARFHFHHFMQQIDAQLRRLQGKKNPLQYIAKEMAKSIRL
CCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LCFDEFLVHDVAYAMILAELLQALHHYGVVLVISSNTHPDELYLNGVHRERFIPAIEIIK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHH
KDCEVLNLNQKRDYRLGRQPLLEAYLYPLNEQIQEAMEKQFALITREEDCKGFITVQNRD
HHHHHCCCCCHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
IPYIKYGARSIWFAFDVICNFPRSQLDYLEIADRFDNVFLSDVYQLTESHTAQAIMFIHF
CCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDVMYDRGIKLIISADVPAEELYVKGEMKETFKRTLSRLIEMQSVDYLSRHPRRLVKEML
HHHHHHCCEEEEEECCCCHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHC
>Mature Secondary Structure 
SLIEQYEAAIYRGEIDSDPEQREILEHMQRLAEDLQKKNDSWFPWRKKHPIKGLYIYGP
CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC
VGVGKTYLVDLFYQHIDEEKKARFHFHHFMQQIDAQLRRLQGKKNPLQYIAKEMAKSIRL
CCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LCFDEFLVHDVAYAMILAELLQALHHYGVVLVISSNTHPDELYLNGVHRERFIPAIEIIK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHH
KDCEVLNLNQKRDYRLGRQPLLEAYLYPLNEQIQEAMEKQFALITREEDCKGFITVQNRD
HHHHHCCCCCHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
IPYIKYGARSIWFAFDVICNFPRSQLDYLEIADRFDNVFLSDVYQLTESHTAQAIMFIHF
CCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDVMYDRGIKLIISADVPAEELYVKGEMKETFKRTLSRLIEMQSVDYLSRHPRRLVKEML
HHHHHHCCEEEEEECCCCHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]