Click here to switch to the map view.

The map label for this gene is cycB

Identifier: 148358532

GI number: 148358532

Start: 3257050

End: 3257478

Strand: Reverse

Name: cycB

Synonym: LPC_0403

Alternate gene names: NA

Gene position: 3257478-3257050 (Counterclockwise)

Preceding gene: 148358530

Following gene: 148358533

Centisome position: 91.08

GC content: 40.56

Gene sequence:

>429_bases
ATGAGGTTGAATATTGCGCTGATCTTGTCTTTTTTTTCAATCATGCTTTTTGCAATGGACGAGGTGGATGAGCAACAAAT
TTTACAAAGAATTCAACCGGTTGGGAAAGTTCGAGTCCAAGAGGATCTGGGGAATAACATAGAAGCTGAAGCGACTAAAG
CGACGGTTGTTGATTCCAAGAGCAAAAAAGAACCAGGCCAAGATATATATGATAAATATTGCTCCGTATGTCATAAAGAT
GGATTGGCAGGGGCGCCTAAATTTCAATCGGAGGCCGATTGGAAACCTCGTTTGGCAAGTAAAAAAATAGATGATTTACT
CGCTTCTGCAATCAAGGGGTTGAATGCCATGCCAGCAAAAGGTACTTGTATGGACTGTTCTGATGCTGAATTAAAAGCTG
CGATACAATATATGTTGCCGAAATCATGA

Upstream 100 bases:

>100_bases
TTAATGACTTTATAAATCGTTGGGCCTATTGAAATCTTTCTGGAAAAAAAAGTCACTTGTCGGTATGATTTTTAAATTAA
CTATTAGAGGACGGATAAAT

Downstream 100 bases:

>100_bases
AAAAGCTTACTTACAGAAAAATACAATCTTTTCAGGCAATTATTACAGTATTGGTAATATTTGCTTCGTTTTACCTTGAA
TATGCTGTCGGACTACAACC

Product: cytochrome c5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MRLNIALILSFFSIMLFAMDEVDEQQILQRIQPVGKVRVQEDLGNNIEAEATKATVVDSKSKKEPGQDIYDKYCSVCHKD
GLAGAPKFQSEADWKPRLASKKIDDLLASAIKGLNAMPAKGTCMDCSDAELKAAIQYMLPKS

Sequences:

>Translated_142_residues
MRLNIALILSFFSIMLFAMDEVDEQQILQRIQPVGKVRVQEDLGNNIEAEATKATVVDSKSKKEPGQDIYDKYCSVCHKD
GLAGAPKFQSEADWKPRLASKKIDDLLASAIKGLNAMPAKGTCMDCSDAELKAAIQYMLPKS
>Mature_142_residues
MRLNIALILSFFSIMLFAMDEVDEQQILQRIQPVGKVRVQEDLGNNIEAEATKATVVDSKSKKEPGQDIYDKYCSVCHKD
GLAGAPKFQSEADWKPRLASKKIDDLLASAIKGLNAMPAKGTCMDCSDAELKAAIQYMLPKS

Specific function: It is unreactive with cytochrome c reductase or oxidase [H]

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR002323 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15652; Mature: 15652

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLNIALILSFFSIMLFAMDEVDEQQILQRIQPVGKVRVQEDLGNNIEAEATKATVVDSK
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEHHHHCCCCCCCHHHHHHHCCC
SKKEPGQDIYDKYCSVCHKDGLAGAPKFQSEADWKPRLASKKIDDLLASAIKGLNAMPAK
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
GTCMDCSDAELKAAIQYMLPKS
CCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MRLNIALILSFFSIMLFAMDEVDEQQILQRIQPVGKVRVQEDLGNNIEAEATKATVVDSK
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEHHHHCCCCCCCHHHHHHHCCC
SKKEPGQDIYDKYCSVCHKDGLAGAPKFQSEADWKPRLASKKIDDLLASAIKGLNAMPAK
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
GTCMDCSDAELKAAIQYMLPKS
CCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2993632 [H]