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The map label for this gene is rbpA [H]

Identifier: 148358462

GI number: 148358462

Start: 352942

End: 353217

Strand: Direct

Name: rbpA [H]

Synonym: LPC_0328

Alternate gene names: 148358462

Gene position: 352942-353217 (Clockwise)

Preceding gene: 148358459

Following gene: 148358463

Centisome position: 9.87

GC content: 35.14

Gene sequence:

>276_bases
ATGAAACAAAAAAAAATATATGTTGGTAATTTACCATTTGGTACGACTGAAGAAGCATTAAGCATTCAATTTTCTCAATA
TGGAAAAATCGAGGAAATGTTCTTAATTAAGGATCGATTAACAGGGCAAATGAAGGGATTTGGTTTTATAACGTTTTCTG
CTCAGCAGGAAGCGGAATCTGCGTTAGAGATGAATGGTCAGCCATTTGATGGACGTTCATTAAAAGTATGCATGGCACAA
AAAAAAACTAATTCTGTTTCTCGTAGCCGGTGGTAA

Upstream 100 bases:

>100_bases
TAGATTTAATTCTACGCACAATACTCTTTTCGATCGTTTGATTTTTTACTCTTCTTGCTGTCCTCCAGATCATTGTTCGT
TAATCTATTCAGGAGCAATG

Downstream 100 bases:

>100_bases
AGTAGAGTATTTACATAATTCCGATGTTATCGTATCAAGAACTGCATCACTGCAGATAAATTTTTAATCTACGTTGGCTC
AACTTTTTCAGCCCCGAGTG

Product: RNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 91; Mature: 91

Protein sequence:

>91_residues
MKQKKIYVGNLPFGTTEEALSIQFSQYGKIEEMFLIKDRLTGQMKGFGFITFSAQQEAESALEMNGQPFDGRSLKVCMAQ
KKTNSVSRSRW

Sequences:

>Translated_91_residues
MKQKKIYVGNLPFGTTEEALSIQFSQYGKIEEMFLIKDRLTGQMKGFGFITFSAQQEAESALEMNGQPFDGRSLKVCMAQ
KKTNSVSRSRW
>Mature_91_residues
MKQKKIYVGNLPFGTTEEALSIQFSQYGKIEEMFLIKDRLTGQMKGFGFITFSAQQEAESALEMNGQPFDGRSLKVCMAQ
KKTNSVSRSRW

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4502847, Length=87, Percent_Identity=42.5287356321839, Blast_Score=77, Evalue=3e-15,
Organism=Homo sapiens, GI5803137, Length=81, Percent_Identity=44.4444444444444, Blast_Score=75, Evalue=1e-14,
Organism=Homo sapiens, GI153252068, Length=78, Percent_Identity=42.3076923076923, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI223890219, Length=91, Percent_Identity=38.4615384615385, Blast_Score=71, Evalue=2e-13,
Organism=Homo sapiens, GI242117971, Length=80, Percent_Identity=42.5, Blast_Score=70, Evalue=3e-13,
Organism=Homo sapiens, GI21361809, Length=80, Percent_Identity=42.5, Blast_Score=70, Evalue=3e-13,
Organism=Homo sapiens, GI56699409, Length=80, Percent_Identity=41.25, Blast_Score=69, Evalue=9e-13,
Organism=Homo sapiens, GI35493811, Length=88, Percent_Identity=42.0454545454545, Blast_Score=67, Evalue=2e-12,
Organism=Homo sapiens, GI4757926, Length=88, Percent_Identity=42.0454545454545, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI14149675, Length=82, Percent_Identity=40.2439024390244, Blast_Score=65, Evalue=9e-12,
Organism=Homo sapiens, GI4557493, Length=82, Percent_Identity=40.2439024390244, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI221139802, Length=75, Percent_Identity=41.3333333333333, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI116734694, Length=73, Percent_Identity=46.5753424657534, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI116734698, Length=73, Percent_Identity=46.5753424657534, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI116734696, Length=73, Percent_Identity=46.5753424657534, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=85, Percent_Identity=41.1764705882353, Blast_Score=75, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=48.0519480519481, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=40.2597402597403, Blast_Score=68, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24582417, Length=73, Percent_Identity=45.2054794520548, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI45550943, Length=73, Percent_Identity=45.2054794520548, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24582419, Length=73, Percent_Identity=45.2054794520548, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24582423, Length=73, Percent_Identity=45.2054794520548, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24582421, Length=73, Percent_Identity=45.2054794520548, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI19920866, Length=73, Percent_Identity=45.2054794520548, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24582412, Length=73, Percent_Identity=45.2054794520548, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 10350; Mature: 10350

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQKKIYVGNLPFGTTEEALSIQFSQYGKIEEMFLIKDRLTGQMKGFGFITFSAQQEAES
CCCCEEEECCCCCCCCCHHEEEECCCCCCCHHEEEEHHHCCCCCCCEEEEEECCCHHHHH
ALEMNGQPFDGRSLKVCMAQKKTNSVSRSRW
HHHCCCCCCCCCCEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MKQKKIYVGNLPFGTTEEALSIQFSQYGKIEEMFLIKDRLTGQMKGFGFITFSAQQEAES
CCCCEEEECCCCCCCCCHHEEEECCCCCCCHHEEEEHHHCCCCCCCEEEEEECCCHHHHH
ALEMNGQPFDGRSLKVCMAQKKTNSVSRSRW
HHHCCCCCCCCCCEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8704138; 8590279; 8905231 [H]