Click here to switch to the map view.

The map label for this gene is fdfT

Identifier: 148358267

GI number: 148358267

Start: 134323

End: 135360

Strand: Direct

Name: fdfT

Synonym: LPC_0129

Alternate gene names: NA

Gene position: 134323-135360 (Clockwise)

Preceding gene: 148358266

Following gene: 148358268

Centisome position: 3.76

GC content: 35.07

Gene sequence:

>1038_bases
ATGGTTATGCGATCGTTTTCTTTTTATTACCAACATCTAGAAAATGTAAGCAGAAGTTTTAGTTTTTGTATAAGCCAGTT
AACTTCTCCAGCAAAAGAATGGGTTGCGTTGAGTTATTTACTTTTGCGTGTTGCAGACAGTATTGAAGATGCCAAATGGC
AAGATCTTCAAACACAAAGTGATTCATTTGCTGCTTTTAAATCATTTTTAGTTCAAACACCGGCAAACGATCAATTCACA
AAATGGCTTTCCAGCTTTCCTTCGCAGCTTCCATTAGGGGAGAAACAACTTCTATGTGCCGTCCCTCTTTTGTTGGAAGA
AAAAGATAATTTACCTGAATCCATCAAGCAATCTGTGATAAAAACAATTTTGCAAGTAGTGGATGGAATGCATTATTTCC
TTAATCATTATCATATGGAAGGCAAAATCGTATTTCCTTCATTAGTTACCACTAATCAATACTGTTTTTTTGTTGCAGGA
TTGGTTGGCAAATTATTGTCGCACATATTTACTGATTTACTATCTAATTTTAAGTGGACAGCCAGTCTGTTAAATCAAGC
CTTTCACTTTGGTTTCTTTTTACAAAAAATCAATCTATTGAAAGATAAAGTGGATGATGAAACAAGTGGGCGTTATTTTA
TTTCTTCAGAGAATAGCTTGCGCGAGAGTTTGGTTATTCATGCACACCATTCACTGGCTTATGTAAAGAGCATCCCAATT
ATTGAAGGACGCCCGTATCGCTTATTTTGTGCTTGGTCTTTATTTATTGGTTTGGCTTCATTGAAATGGCTTGATAAATA
TGGTCACCGACAAAAAATTAAACCCCGAGAAACGTATTATCTGGTTAACCAAATAAATCTGTTAATTGATGATAACCGCG
CTTTAGAAAAATTATTTAACAGCTATCTTCCAGGACAGTATGAAGAAGGTTCATGTTATGCTTCTGAGTCAACGAAAAAA
ATACCAACTTGGTTTAAGAAAATTTACGATGATGAGATGGATTCTCTGATTTTGTCTGAGCTGGATGTCCAAGTATGA

Upstream 100 bases:

>100_bases
GGAAAAATTATATTTCATATGATGAGCTATCAAAAACAGTGGAAGAAAATTACGAGAGAATAAAACAGGCATTATCAAAA
AGCGAACATCAACTTGGCTG

Downstream 100 bases:

>100_bases
TAATTGGAGATGTTTGGTGCAAACTGCCCAAATTTGTGTGCGGTTTCAAACAGAATTATACCTGAAATTGGCTGAGCAAT
TTCCTGACCTGATTTCCCCA

Product: squalene and phytoene synthase

Products: NA

Alternate protein names: Farnesyl-Diphosphate Farnesyltransferase; Squalene Synthase; Squalene And Phytoene Synthases; Squalene And Phytoene Synthase

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MVMRSFSFYYQHLENVSRSFSFCISQLTSPAKEWVALSYLLLRVADSIEDAKWQDLQTQSDSFAAFKSFLVQTPANDQFT
KWLSSFPSQLPLGEKQLLCAVPLLLEEKDNLPESIKQSVIKTILQVVDGMHYFLNHYHMEGKIVFPSLVTTNQYCFFVAG
LVGKLLSHIFTDLLSNFKWTASLLNQAFHFGFFLQKINLLKDKVDDETSGRYFISSENSLRESLVIHAHHSLAYVKSIPI
IEGRPYRLFCAWSLFIGLASLKWLDKYGHRQKIKPRETYYLVNQINLLIDDNRALEKLFNSYLPGQYEEGSCYASESTKK
IPTWFKKIYDDEMDSLILSELDVQV

Sequences:

>Translated_345_residues
MVMRSFSFYYQHLENVSRSFSFCISQLTSPAKEWVALSYLLLRVADSIEDAKWQDLQTQSDSFAAFKSFLVQTPANDQFT
KWLSSFPSQLPLGEKQLLCAVPLLLEEKDNLPESIKQSVIKTILQVVDGMHYFLNHYHMEGKIVFPSLVTTNQYCFFVAG
LVGKLLSHIFTDLLSNFKWTASLLNQAFHFGFFLQKINLLKDKVDDETSGRYFISSENSLRESLVIHAHHSLAYVKSIPI
IEGRPYRLFCAWSLFIGLASLKWLDKYGHRQKIKPRETYYLVNQINLLIDDNRALEKLFNSYLPGQYEEGSCYASESTKK
IPTWFKKIYDDEMDSLILSELDVQV
>Mature_345_residues
MVMRSFSFYYQHLENVSRSFSFCISQLTSPAKEWVALSYLLLRVADSIEDAKWQDLQTQSDSFAAFKSFLVQTPANDQFT
KWLSSFPSQLPLGEKQLLCAVPLLLEEKDNLPESIKQSVIKTILQVVDGMHYFLNHYHMEGKIVFPSLVTTNQYCFFVAG
LVGKLLSHIFTDLLSNFKWTASLLNQAFHFGFFLQKINLLKDKVDDETSGRYFISSENSLRESLVIHAHHSLAYVKSIPI
IEGRPYRLFCAWSLFIGLASLKWLDKYGHRQKIKPRETYYLVNQINLLIDDNRALEKLFNSYLPGQYEEGSCYASESTKK
IPTWFKKIYDDEMDSLILSELDVQV

Specific function: Unknown

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI67089147, Length=218, Percent_Identity=29.8165137614679, Blast_Score=72, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39933; Mature: 39933

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS01044 SQUALEN_PHYTOEN_SYN_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure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HHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA