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The map label for this gene is spoT47 [H]

Identifier: 148285111

GI number: 148285111

Start: 1986739

End: 1987332

Strand: Direct

Name: spoT47 [H]

Synonym: OTBS_2055

Alternate gene names: 148285111

Gene position: 1986739-1987332 (Clockwise)

Preceding gene: 148285110

Following gene: 148285115

Centisome position: 93.4

GC content: 29.46

Gene sequence:

>594_bases
ATGATAGACTTTTATAGCGAGAGCTTACTAAATAAGCTGTTTGAAACCAACGTAAGATTTAATACTAAAATTGATCTTGA
TAAAGTTGAAAGAGCAATACTTTACGCTAAAAAATATCATGACAAACAACTTCGAGATACAGGAGAGCCATATTATATGC
ATCCATTAGAAGTAGCTTATATGGTATCAGACTACAGCTTTGAAACTGATACAATTATTACAGCAATACTACATGATACA
CTCGAAGACACAACACTAACCAAAGAAATAATAAGTCAAGAATTTGGTAATAATATTGCAGAACAGGTTTCAGACCTCAC
CAGAATTAAGGATAATAAAAAAATCAGTTCTAGAGAAATGATTCAAACATTTTATAGCCAAAATAAAACAGAACTATTAT
TAATTAAGCTTTTCGATCGACTACATAATATTCAAACCATACACATAAAACCTTATGAAAAAAGACAAAAAATCGTTATT
GAAACTCAGCAAGAATTTATACCTCTTGCTGAATATCTTAAATTACCAGAAATTGCCATAGAGCTAAATAAATACTGTGA
GCTTTATGCTAGTTGGAATACAAACTTTTTCTAA

Upstream 100 bases:

>100_bases
ACAATTTGATTTGCTTCTTTCCTAGACTTTGTCTGAGATTGAAGCATATAAAAAGTTTAAATTATGGTATAATTTATTAA
AGATTATTTGGAGATGGAAA

Downstream 100 bases:

>100_bases
CTAGCATACATAGCATTACATATATTTCTACTTTCACAATGGAGTATAGCTGCTTGGCATAGATATATTATCGTTCTGGA
TCATCAATTAATAGTATATT

Product: spoT-like ppGpp hydrolase

Products: NA

Alternate protein names: (p)ppGpp synthase; ATP:GTP 3'-pyrophosphotransferase [H]

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MIDFYSESLLNKLFETNVRFNTKIDLDKVERAILYAKKYHDKQLRDTGEPYYMHPLEVAYMVSDYSFETDTIITAILHDT
LEDTTLTKEIISQEFGNNIAEQVSDLTRIKDNKKISSREMIQTFYSQNKTELLLIKLFDRLHNIQTIHIKPYEKRQKIVI
ETQQEFIPLAEYLKLPEIAIELNKYCELYASWNTNFF

Sequences:

>Translated_197_residues
MIDFYSESLLNKLFETNVRFNTKIDLDKVERAILYAKKYHDKQLRDTGEPYYMHPLEVAYMVSDYSFETDTIITAILHDT
LEDTTLTKEIISQEFGNNIAEQVSDLTRIKDNKKISSREMIQTFYSQNKTELLLIKLFDRLHNIQTIHIKPYEKRQKIVI
ETQQEFIPLAEYLKLPEIAIELNKYCELYASWNTNFF
>Mature_197_residues
MIDFYSESLLNKLFETNVRFNTKIDLDKVERAILYAKKYHDKQLRDTGEPYYMHPLEVAYMVSDYSFETDTIITAILHDT
LEDTTLTKEIISQEFGNNIAEQVSDLTRIKDNKKISSREMIQTFYSQNKTELLLIKLFDRLHNIQTIHIKPYEKRQKIVI
ETQQEFIPLAEYLKLPEIAIELNKYCELYASWNTNFF

Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. Plays a role in ada

COG id: COG0317

COG function: function code TK; Guanosine polyphosphate pyrophosphohydrolases/synthetases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HD domain [H]

Homologues:

Organism=Escherichia coli, GI1790082, Length=184, Percent_Identity=33.695652173913, Blast_Score=98, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI25143118, Length=129, Percent_Identity=31.7829457364341, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002912
- InterPro:   IPR012675
- InterPro:   IPR003607
- InterPro:   IPR007685
- InterPro:   IPR004811
- InterPro:   IPR004095
- InterPro:   IPR012676 [H]

Pfam domain/function: PF01842 ACT; PF04607 RelA_SpoT; PF02824 TGS [H]

EC number: =2.7.6.5 [H]

Molecular weight: Translated: 23467; Mature: 23467

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDFYSESLLNKLFETNVRFNTKIDLDKVERAILYAKKYHDKQLRDTGEPYYMHPLEVAY
CCCHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHEE
MVSDYSFETDTIITAILHDTLEDTTLTKEIISQEFGNNIAEQVSDLTRIKDNKKISSREM
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHH
IQTFYSQNKTELLLIKLFDRLHNIQTIHIKPYEKRQKIVIETQQEFIPLAEYLKLPEIAI
HHHHHCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCEEEECHHHHHHHHHHHCCCHHHH
ELNKYCELYASWNTNFF
HHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIDFYSESLLNKLFETNVRFNTKIDLDKVERAILYAKKYHDKQLRDTGEPYYMHPLEVAY
CCCHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHEE
MVSDYSFETDTIITAILHDTLEDTTLTKEIISQEFGNNIAEQVSDLTRIKDNKKISSREM
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHH
IQTFYSQNKTELLLIKLFDRLHNIQTIHIKPYEKRQKIVIETQQEFIPLAEYLKLPEIAI
HHHHHCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCEEEECHHHHHHHHHHHCCCHHHH
ELNKYCELYASWNTNFF
HHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA