Click here to switch to the map view.

The map label for this gene is tpr1B19

Identifier: 148285105

GI number: 148285105

Start: 1975308

End: 1976102

Strand: Direct

Name: tpr1B19

Synonym: OTBS_2044

Alternate gene names: NA

Gene position: 1975308-1976102 (Clockwise)

Preceding gene: 148285103

Following gene: 148285106

Centisome position: 92.87

GC content: 30.19

Gene sequence:

>795_bases
ATGTATAACCTAAATACTATAATAAATAAATTACTTAATATGTTTAGATTTATTTGCACTCTTTTTGTTTTGTTATGTTT
TACTAACTGCATAATCTTTGCAAAAGAAAAAACAATAATTACTTACCTTTCAGAAGATGATGCATACTCAAGAGCTGAGT
TGCTCTTTCAGAAGAAAAAATATAATGCTGCTGCAAAGCAATTTTTTGATATTTTTGTTCAACATCTTGGCTCAAATACT
GCAACAAAGGCAGAATTAATGCAAGGCTATAGTCTATACTTAGCAGGACAATATTCAGAAGCATCTGAGGTGCTAGATAA
TTTTATTAGATTACACCCTGTGCATCAAAAAATTGCGGATGTATACTATTTAAAAGCTCTGGCAGAATACAAGCAAGCTC
ATAATCAACAAGATCTAGAGCAGCTTCTTCATGCAAAATTAGCGCTACAGCAAGTAATAGATAAATTTCCTAAAAGTGAT
TTTGCTGTAAAAGCAAAAGAAAAAATAAATGTTATCTCTAAAAATTTAGCTAGTAGTCAAATTGATATCGGAAAGTTTTA
TTTAAATAAGAAAAATCCTATTGCAGCTTTAAATAGATTTAATACTGTAGTGGATAAGTATTCTCATACATCATATTATC
CAGAAGCTATTTATAGAATTGCTCAAAGCTATGCACTGTTAGGACGCAAGCAAGAAATGAAAGAACAATTAGCTATTTTG
AACATTAAATTTCCAAACGGTACTTGGTCTAAACGAGCTAGCTCATTATTACAGCTCAATGATTGTAATGCGTAA

Upstream 100 bases:

>100_bases
TGTCGCTCATAAAAGCGTGCTGGTTCAAGTCCAGTCAAGGGCACCAACTGTTTTATTATTTATTTAATATTTGTACAATA
AAATAATATTAAATTTAGTA

Downstream 100 bases:

>100_bases
AGCAATTCCATGTAATGCAGCATTTTTATACTAGATAGACTGGATGTTGCCATCTCTTCCATTCAAAAAGCATATTTGAA
TAATTGCATAGTAGTTTTTG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MYNLNTIINKLLNMFRFICTLFVLLCFTNCIIFAKEKTIITYLSEDDAYSRAELLFQKKKYNAAAKQFFDIFVQHLGSNT
ATKAELMQGYSLYLAGQYSEASEVLDNFIRLHPVHQKIADVYYLKALAEYKQAHNQQDLEQLLHAKLALQQVIDKFPKSD
FAVKAKEKINVISKNLASSQIDIGKFYLNKKNPIAALNRFNTVVDKYSHTSYYPEAIYRIAQSYALLGRKQEMKEQLAIL
NIKFPNGTWSKRASSLLQLNDCNA

Sequences:

>Translated_264_residues
MYNLNTIINKLLNMFRFICTLFVLLCFTNCIIFAKEKTIITYLSEDDAYSRAELLFQKKKYNAAAKQFFDIFVQHLGSNT
ATKAELMQGYSLYLAGQYSEASEVLDNFIRLHPVHQKIADVYYLKALAEYKQAHNQQDLEQLLHAKLALQQVIDKFPKSD
FAVKAKEKINVISKNLASSQIDIGKFYLNKKNPIAALNRFNTVVDKYSHTSYYPEAIYRIAQSYALLGRKQEMKEQLAIL
NIKFPNGTWSKRASSLLQLNDCNA
>Mature_264_residues
MYNLNTIINKLLNMFRFICTLFVLLCFTNCIIFAKEKTIITYLSEDDAYSRAELLFQKKKYNAAAKQFFDIFVQHLGSNT
ATKAELMQGYSLYLAGQYSEASEVLDNFIRLHPVHQKIADVYYLKALAEYKQAHNQQDLEQLLHAKLALQQVIDKFPKSD
FAVKAKEKINVISKNLASSQIDIGKFYLNKKNPIAALNRFNTVVDKYSHTSYYPEAIYRIAQSYALLGRKQEMKEQLAIL
NIKFPNGTWSKRASSLLQLNDCNA

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30398; Mature: 30398

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNLNTIINKLLNMFRFICTLFVLLCFTNCIIFAKEKTIITYLSEDDAYSRAELLFQKKK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCEEEEEECCCCHHHHHHHHHHHHH
YNAAAKQFFDIFVQHLGSNTATKAELMQGYSLYLAGQYSEASEVLDNFIRLHPVHQKIAD
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
VYYLKALAEYKQAHNQQDLEQLLHAKLALQQVIDKFPKSDFAVKAKEKINVISKNLASSQ
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCC
IDIGKFYLNKKNPIAALNRFNTVVDKYSHTSYYPEAIYRIAQSYALLGRKQEMKEQLAIL
CHHHHHEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHEE
NIKFPNGTWSKRASSLLQLNDCNA
EEECCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MYNLNTIINKLLNMFRFICTLFVLLCFTNCIIFAKEKTIITYLSEDDAYSRAELLFQKKK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCEEEEEECCCCHHHHHHHHHHHHH
YNAAAKQFFDIFVQHLGSNTATKAELMQGYSLYLAGQYSEASEVLDNFIRLHPVHQKIAD
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
VYYLKALAEYKQAHNQQDLEQLLHAKLALQQVIDKFPKSDFAVKAKEKINVISKNLASSQ
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCC
IDIGKFYLNKKNPIAALNRFNTVVDKYSHTSYYPEAIYRIAQSYALLGRKQEMKEQLAIL
CHHHHHEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHEE
NIKFPNGTWSKRASSLLQLNDCNA
EEECCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]