Click here to switch to the map view.

The map label for this gene is recO

Identifier: 148284965

GI number: 148284965

Start: 1718353

End: 1719078

Strand: Direct

Name: recO

Synonym: OTBS_1772

Alternate gene names: 148284965

Gene position: 1718353-1719078 (Clockwise)

Preceding gene: 148284964

Following gene: 148284969

Centisome position: 80.79

GC content: 26.45

Gene sequence:

>726_bases
ATGAATTTTAGAGACAAAGCAATAATTCTAAAAAAAAGAAATATCAAAGAAAATTTAGCAATTGTAACAGTATTAACTCA
ATCATATGGAATTTATTCTGGAATTATAAAAGATTTACATAGTAAAAAAAATACAATCATATACCAAATAGGTAATATAG
TAGATTTTTGCTGGAGTGCACGCTTAGATAAGCATTTAGGTACTATAAACTGTGAGCTAGTAAAATCTTACTCCTATTTG
ATTATGTCTAATAAACGTAATCTATTTTACACTCACAGCTTAATCGAATTAACTTTAATGTCTTTTAAAGAAAGAGAGTT
ACACGCTAATTTATTTGAAAAATGGTTGGGAAATCTTGAATCAATAAATGTTGGCAATATTAACATTAAAAATTATATTA
ATTTTGAGCTTTTAATTTTAAAAGAAGCAGGATATCAACTCACCTTAGACAGATGTGGTGTTACTAACTGTACGCAAAAT
TTAATTTATGTTTCACCTAAGTCAGGACAAGCTATATCTGCAGCTGTTGGAGAGCCATATAAACACAAACTGTTATTATT
ACCTAAATTTTTGGTTCATAATAATTGTGAACCAGAAGATATTTATGAAATTCAGGCTGCATTTAACTTAACAGCGTATT
TTTTTAATAAGTATGTACTAATAAAAAAAAAATTACCAATTGCTAGAGAGCTATTATTAAAAAGTATACTGGCATATAGT
TTTTAA

Upstream 100 bases:

>100_bases
ATGGGAGAATGGTAGAAAAGCCCCAAATTGGGTAAAAATATAATTTTATAATTTTTTTACTAAACTTGATTTCTATAAGT
TGATTATTTACTAATTTTTT

Downstream 100 bases:

>100_bases
ACATGGATTTTTTATGACAACTTCATTAATTAATGTTTAAATATTCTTGAATTTTTGATTTACATAAGCCGGTATCAGTA
CTGTATGATATACGTTATCT

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MNFRDKAIILKKRNIKENLAIVTVLTQSYGIYSGIIKDLHSKKNTIIYQIGNIVDFCWSARLDKHLGTINCELVKSYSYL
IMSNKRNLFYTHSLIELTLMSFKERELHANLFEKWLGNLESINVGNINIKNYINFELLILKEAGYQLTLDRCGVTNCTQN
LIYVSPKSGQAISAAVGEPYKHKLLLLPKFLVHNNCEPEDIYEIQAAFNLTAYFFNKYVLIKKKLPIARELLLKSILAYS
F

Sequences:

>Translated_241_residues
MNFRDKAIILKKRNIKENLAIVTVLTQSYGIYSGIIKDLHSKKNTIIYQIGNIVDFCWSARLDKHLGTINCELVKSYSYL
IMSNKRNLFYTHSLIELTLMSFKERELHANLFEKWLGNLESINVGNINIKNYINFELLILKEAGYQLTLDRCGVTNCTQN
LIYVSPKSGQAISAAVGEPYKHKLLLLPKFLVHNNCEPEDIYEIQAAFNLTAYFFNKYVLIKKKLPIARELLLKSILAYS
F
>Mature_241_residues
MNFRDKAIILKKRNIKENLAIVTVLTQSYGIYSGIIKDLHSKKNTIIYQIGNIVDFCWSARLDKHLGTINCELVKSYSYL
IMSNKRNLFYTHSLIELTLMSFKERELHANLFEKWLGNLESINVGNINIKNYINFELLILKEAGYQLTLDRCGVTNCTQN
LIYVSPKSGQAISAAVGEPYKHKLLLLPKFLVHNNCEPEDIYEIQAAFNLTAYFFNKYVLIKKKLPIARELLLKSILAYS
F

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_ORITB (A5CF17)

Other databases:

- EMBL:   AM494475
- RefSeq:   YP_001249055.1
- STRING:   A5CF17
- GeneID:   5218154
- GenomeReviews:   AM494475_GR
- KEGG:   ots:OTBS_1772
- eggNOG:   COG1381
- HOGENOM:   HBG474229
- OMA:   PERDPHP
- ProtClustDB:   PRK00085
- BioCyc:   OTSU357244:OTBS_1772-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 27809; Mature: 27809

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFRDKAIILKKRNIKENLAIVTVLTQSYGIYSGIIKDLHSKKNTIIYQIGNIVDFCWSA
CCCCCCEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHH
RLDKHLGTINCELVKSYSYLIMSNKRNLFYTHSLIELTLMSFKERELHANLFEKWLGNLE
HHHHCCCCEEEEEEECEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SINVGNINIKNYINFELLILKEAGYQLTLDRCGVTNCTQNLIYVSPKSGQAISAAVGEPY
EEECCCEEECEEEEEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCEEEHHCCCCC
KHKLLLLPKFLVHNNCEPEDIYEIQAAFNLTAYFFNKYVLIKKKLPIARELLLKSILAYS
CCEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHC
F
C
>Mature Secondary Structure
MNFRDKAIILKKRNIKENLAIVTVLTQSYGIYSGIIKDLHSKKNTIIYQIGNIVDFCWSA
CCCCCCEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHH
RLDKHLGTINCELVKSYSYLIMSNKRNLFYTHSLIELTLMSFKERELHANLFEKWLGNLE
HHHHCCCCEEEEEEECEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SINVGNINIKNYINFELLILKEAGYQLTLDRCGVTNCTQNLIYVSPKSGQAISAAVGEPY
EEECCCEEECEEEEEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCEEEHHCCCCC
KHKLLLLPKFLVHNNCEPEDIYEIQAAFNLTAYFFNKYVLIKKKLPIARELLLKSILAYS
CCEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHC
F
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA