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The map label for this gene is secD [H]

Identifier: 148284959

GI number: 148284959

Start: 1708527

End: 1710089

Strand: Direct

Name: secD [H]

Synonym: OTBS_1761

Alternate gene names: 148284959

Gene position: 1708527-1710089 (Clockwise)

Preceding gene: 148284958

Following gene: 148284961

Centisome position: 80.32

GC content: 30.52

Gene sequence:

>1563_bases
ATGAAGCAATTCTTATTTAATAAAATATTTATTACAGTACTAATTACAGCTATAGCACTTTGCTTCGTAGTACCGAATTT
TTTTGATACTACAAAATATCAATGGTTGCCTCAAAAAACTATTAACTTAGGATTAGATTTAAAAGGAGGGTCGTATGTTC
TGCTCCAGTTAGATTTTGATACCTATGTTACAGAGCAATTAAATATTATTGTTGGAAATCTTAGAAAAGAATTACGAAAT
AATAAAATTGGTTACAAAGAGTTAAAAATTCAAAAGCAATATATTCATTTAGAGTTACGAGATAGCGAGGCTCGTTTTAA
AGTAGAAAATTTATTGCGCAACTTAGAGACTAGTATACTAATTAAGTTTAGTCAAAATAATAAGCTACACATTAGCTTCA
CAGATCATAAATTATCAGAGTTAAGAGAATCTTTGATAGAAAATAGTATGGAAATAATAAGAATGAGAGTTGATAGTAGT
GGAACAACTGAAGCAAATATTCAAAAACATGGAGATAACAACATAATATTAGAAGTGCCAGGAATTGAAGATCCTAAACA
TTTAAAAAATTTAGTTACCAAAATAGCAAAGCTTACTTTTAACATTGTTGATAGTGGAATTGTTGCTCAAGATCAGCACA
TATCTAAAGATTTGATGTTAGTTAAGGAACAGAATAATCCAGAAAATAAATTATTAGTAAGAAGACAGCCAACAATAGGC
GGAGATTTGCTTACTAATGCAAACGTAAGTTTTAATAAGTATTCTCAGCCTGTAGTTTCATTCACATTTAATAGCTTAGG
AACTAAATTGTTTGCTGATATTACAAAAGAATACCAAGGTAGACGGTTAGCTATTATTTTAGATGGCAAACTGTTAAGTG
CTCCTGTTATTTCTGAACCAATATTAGGAGGAGCAGGTATGATTTCTGGCAATTTTACTATCGAATCAGCAAAAGAACTT
AGCCTATTACTTAAATCTGGAGCACTGCCAGCTGCATTAAGCGTTATAGAAGAAAAAACAATAGGCCCAACTCTTGGAAG
CGATTCAATTCATGCAGGTAAACTTGCTGGTTGTATTGGATTCGTTTTGGTATGTATTTTTATGTTATGTATATATGGCA
TTTTAGGATTATTTGCTAATATAGCATTATTTTTTAGTTTGATATATATATTGGCAATATTATCAATGTTACAGGCAACA
TTAACGCTGCCAGGAATTGCTGGTATAATATTAACTATAGGCATGGCTGTTGATGCTAATATATTAATTTATGAACGAAT
ACGGGAAGAGTTACAAAATGGCAGCTCGATTTTATATTCAGTTAGAGAGGGGTTTAAATTGTCTTTTGCTACTATTATTG
ACTCCAATATTACTACTTTATTAGCTGCAATTCTGCTTTATATATTTGGTACTGGAGCAGTTAAAGGTTTTGCGATAACA
CTAGCAATTGGTATACTATCTTCTATGTATTCAGCAACAATTATAACTAGGCTGTTAATAGATTCATGGGTAAAGTATAA
ACTTCCAATAAAGTTAAACACTACAACAATTTGTAAGAGGTAA

Upstream 100 bases:

>100_bases
ATATTATAACACTTGAAATTGCTCCTGGTACTAAAATCAAAATTTTGAGAGCAGCTATTGCTGATGTTATTAGTAGAAAA
CCAGCGTCAAAAGGCAGTAA

Downstream 100 bases:

>100_bases
CTGATATATGCACATATTAAGGCGATATACTTAGCTAAAAAAAGAGAATTAGAAATTGTGAGAGGAAGATTAAGCTACTA
TAGCTACACTACTATAAACA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MKQFLFNKIFITVLITAIALCFVVPNFFDTTKYQWLPQKTINLGLDLKGGSYVLLQLDFDTYVTEQLNIIVGNLRKELRN
NKIGYKELKIQKQYIHLELRDSEARFKVENLLRNLETSILIKFSQNNKLHISFTDHKLSELRESLIENSMEIIRMRVDSS
GTTEANIQKHGDNNIILEVPGIEDPKHLKNLVTKIAKLTFNIVDSGIVAQDQHISKDLMLVKEQNNPENKLLVRRQPTIG
GDLLTNANVSFNKYSQPVVSFTFNSLGTKLFADITKEYQGRRLAIILDGKLLSAPVISEPILGGAGMISGNFTIESAKEL
SLLLKSGALPAALSVIEEKTIGPTLGSDSIHAGKLAGCIGFVLVCIFMLCIYGILGLFANIALFFSLIYILAILSMLQAT
LTLPGIAGIILTIGMAVDANILIYERIREELQNGSSILYSVREGFKLSFATIIDSNITTLLAAILLYIFGTGAVKGFAIT
LAIGILSSMYSATIITRLLIDSWVKYKLPIKLNTTTICKR

Sequences:

>Translated_520_residues
MKQFLFNKIFITVLITAIALCFVVPNFFDTTKYQWLPQKTINLGLDLKGGSYVLLQLDFDTYVTEQLNIIVGNLRKELRN
NKIGYKELKIQKQYIHLELRDSEARFKVENLLRNLETSILIKFSQNNKLHISFTDHKLSELRESLIENSMEIIRMRVDSS
GTTEANIQKHGDNNIILEVPGIEDPKHLKNLVTKIAKLTFNIVDSGIVAQDQHISKDLMLVKEQNNPENKLLVRRQPTIG
GDLLTNANVSFNKYSQPVVSFTFNSLGTKLFADITKEYQGRRLAIILDGKLLSAPVISEPILGGAGMISGNFTIESAKEL
SLLLKSGALPAALSVIEEKTIGPTLGSDSIHAGKLAGCIGFVLVCIFMLCIYGILGLFANIALFFSLIYILAILSMLQAT
LTLPGIAGIILTIGMAVDANILIYERIREELQNGSSILYSVREGFKLSFATIIDSNITTLLAAILLYIFGTGAVKGFAIT
LAIGILSSMYSATIITRLLIDSWVKYKLPIKLNTTTICKR
>Mature_520_residues
MKQFLFNKIFITVLITAIALCFVVPNFFDTTKYQWLPQKTINLGLDLKGGSYVLLQLDFDTYVTEQLNIIVGNLRKELRN
NKIGYKELKIQKQYIHLELRDSEARFKVENLLRNLETSILIKFSQNNKLHISFTDHKLSELRESLIENSMEIIRMRVDSS
GTTEANIQKHGDNNIILEVPGIEDPKHLKNLVTKIAKLTFNIVDSGIVAQDQHISKDLMLVKEQNNPENKLLVRRQPTIG
GDLLTNANVSFNKYSQPVVSFTFNSLGTKLFADITKEYQGRRLAIILDGKLLSAPVISEPILGGAGMISGNFTIESAKEL
SLLLKSGALPAALSVIEEKTIGPTLGSDSIHAGKLAGCIGFVLVCIFMLCIYGILGLFANIALFFSLIYILAILSMLQAT
LTLPGIAGIILTIGMAVDANILIYERIREELQNGSSILYSVREGFKLSFATIIDSNITTLLAAILLYIFGTGAVKGFAIT
LAIGILSSMYSATIITRLLIDSWVKYKLPIKLNTTTICKR

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=495, Percent_Identity=34.9494949494949, Blast_Score=293, Evalue=2e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 57669; Mature: 57669

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQFLFNKIFITVLITAIALCFVVPNFFDTTKYQWLPQKTINLGLDLKGGSYVLLQLDFD
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHEEEEEECCCCEEEEEECCC
TYVTEQLNIIVGNLRKELRNNKIGYKELKIQKQYIHLELRDSEARFKVENLLRNLETSIL
HHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEEEEECCCHHHHHHHHHHCCCEEEE
IKFSQNNKLHISFTDHKLSELRESLIENSMEIIRMRVDSSGTTEANIQKHGDNNIILEVP
EEECCCCEEEEEECHHHHHHHHHHHHHCHHHHEEEEECCCCCCCCCEEECCCCEEEEECC
GIEDPKHLKNLVTKIAKLTFNIVDSGIVAQDQHISKDLMLVKEQNNPENKLLVRRQPTIG
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCC
GDLLTNANVSFNKYSQPVVSFTFNSLGTKLFADITKEYQGRRLAIILDGKLLSAPVISEP
CCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEECCCCCCCC
ILGGAGMISGNFTIESAKELSLLLKSGALPAALSVIEEKTIGPTLGSDSIHAGKLAGCIG
CCCCCCEEECCEEECCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
FVLVCIFMLCIYGILGLFANIALFFSLIYILAILSMLQATLTLPGIAGIILTIGMAVDAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
ILIYERIREELQNGSSILYSVREGFKLSFATIIDSNITTLLAAILLYIFGTGAVKGFAIT
CHHHHHHHHHHCCCHHEEHHHHCCCEEEEHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHH
LAIGILSSMYSATIITRLLIDSWVKYKLPIKLNTTTICKR
HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCHHCCCC
>Mature Secondary Structure
MKQFLFNKIFITVLITAIALCFVVPNFFDTTKYQWLPQKTINLGLDLKGGSYVLLQLDFD
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHEEEEEECCCCEEEEEECCC
TYVTEQLNIIVGNLRKELRNNKIGYKELKIQKQYIHLELRDSEARFKVENLLRNLETSIL
HHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEEEEECCCHHHHHHHHHHCCCEEEE
IKFSQNNKLHISFTDHKLSELRESLIENSMEIIRMRVDSSGTTEANIQKHGDNNIILEVP
EEECCCCEEEEEECHHHHHHHHHHHHHCHHHHEEEEECCCCCCCCCEEECCCCEEEEECC
GIEDPKHLKNLVTKIAKLTFNIVDSGIVAQDQHISKDLMLVKEQNNPENKLLVRRQPTIG
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCC
GDLLTNANVSFNKYSQPVVSFTFNSLGTKLFADITKEYQGRRLAIILDGKLLSAPVISEP
CCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEECCCCCCCC
ILGGAGMISGNFTIESAKELSLLLKSGALPAALSVIEEKTIGPTLGSDSIHAGKLAGCIG
CCCCCCEEECCEEECCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
FVLVCIFMLCIYGILGLFANIALFFSLIYILAILSMLQATLTLPGIAGIILTIGMAVDAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
ILIYERIREELQNGSSILYSVREGFKLSFATIIDSNITTLLAAILLYIFGTGAVKGFAIT
CHHHHHHHHHHCCCHHEEHHHHCCCEEEEHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHH
LAIGILSSMYSATIITRLLIDSWVKYKLPIKLNTTTICKR
HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA