| Definition | Orientia tsutsugamushi Boryong, complete genome. |
|---|---|
| Accession | NC_009488 |
| Length | 2,127,051 |
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The map label for this gene is 148284836
Identifier: 148284836
GI number: 148284836
Start: 1507835
End: 1510324
Strand: Direct
Name: 148284836
Synonym: OTBS_1546
Alternate gene names: NA
Gene position: 1507835-1510324 (Clockwise)
Preceding gene: 148284835
Following gene: 148284839
Centisome position: 70.89
GC content: 29.6
Gene sequence:
>2490_bases ATGGGTAATAAATCAGAGTTAATTGAGATTTTTTTAAATGACTATAACCACTTTGAAAAGTCGTTAACTAAAATATTTTA CAAAATTCCTATAGCAAGAAATACTAATAACGAGGATTTTTGGATGTTCATTTTTATTGGGTCTACATTAACTATTCTAA ATAGCGAGTTAAGAAAAAGTGTTAAATCTATTTGCTATAGTATTACTAATAACAACATCTTGAGGTTAGCATTTAACTTC AACAATAAAATTATATTACGATCTATATCTATTGGATCTAATGATAAAGTTTCTAAAAAATATCAATATTCAAATCAAGA TCTTGATCAGATAAAAGAGCTTTTTTCTTATGACAAAATTATAAACCTGAAAAGTACTTGCTCAAAACATCTTCATATCA AAATTATTCGCGGCAAAACTATCAAAAAACCAAAAATTAGTGTTGTATGTACAGATAATATTGAAGAAGGAGACTATAAT GCTAGCAGCAAGTTTATTAATGTTAATTCTTTAGATATGAAAGGAAAAACATTAGATGAATATTTAGAGTTTATTCGGCC AACAAATAGTAATAATGATGATGATAATGACGACGAGCAAGATTATACAGAAAATGTAGAGCAGCTATTTAATTGCTTTA AAGATTTATATAAGCAAGGCCAAGGAATCTTTGGTACTTCAGAATCACGTTATCATGGGTTTGTTTATGGAGCATTAGTA TTAAACTTCAAACAAAAATATTCGATGGATGTATATGTTGAACAAAGTGCAGGCAGAGGATATCTAGATTTGTATTTGCT ATGTAAACATTATAATCATAATCAGATAGCTAATGCTGATGCTGTTAAAATAATAGCTGAATTTAAAAATGGGAATAATA AATACCCTTCTGTTGCAGATGCAATAAAACAGGTAGAAGATAGGTGTTATGCACAACTTGTTGGTAGAACTCAATCGAAT AAGACTATAATAGTAGGAGCTGATTTTGGGGATATAACTAAGCAAGTACAGGCAAAATTTATGCTGCTTGATAAGTTGCC TGAGCGAGATTTTATAACTTTTATAGCTGATTCAAAGACACAACTGTCTAAAGCTAATATAAAAGAAGAAATAAGGTGGA TATTTAAATCAACACGTTCAGAGGAATCATTAGCTAAAATATTATTAGGAGAGTTATTATCAAGCAAAGTACAAAAAAAG TCTGCAGTTTTTCTGAATAAAATTGATAATGATGAGACCAAGGCTAGTATATTTATTCTTAAGCTATCTAATAACAATAT AATATTATCTACTATTGAGAAAGATGACAAGCCGCTACAGAAATATTGCAGACTAGGTAGTACTAGATTGCAGAGCAGGC ACAATAAAGAAGTTAACGTAACAGATGAAGTAGAATATGCAGTACGATATATTCAAAAACAGTATAAAATTAATTCTGGC ACAAAAATTACTATAATAGTTAATAGAAAAGGACAGAACTATGAAACTTACTTAGAAAGTATAGATATGACAAATTTAAA CTCTAATCCTGCTGACACTGATGTGGGCTATAATATAAAAGACTATATAACACAACCATATAATATTAAGCACAATATTG ATGTATGCAAGCTAATACTAGAATTACTACAAGATATACAAGATGATAAGTTGGGAGAACTTGCTAAGTTTAAAGATGAG CTCTGCGAATTTCAAGCATTTATCACAGAGGAACGCGACTTTCAGGCTATATTACATGGATTATTCTCATTCAAGAAATT TGAAAATACAACTTTAAGGGCAATATCAGAAGTAACATTTGGCACAGGCAAAGCAGATTTAGTGTTGGCATCTAACCGTA GTATACTTTATTTTGAGTTAGCCTTATTAAAGGAACATAATGTGGATACTTTGCTAAATAAAAAAAAACAGCAACTGGAT AAATACCTGGTAAATGCTAAAGTTATTACTAATGATAAGAATGCTAACGGAGTAGTACTAATTTTTGATAGCAAAACAGG TAAGTTATATAACAGGTATCATACTACGCCAGTTGAGCATTCTTCAGATGAAGGAGGGCAAACACCTATATATAATCAAA GAGAAACGCTGGAACCGCGGCTTTTGTCACCAATAGATCAAAATAGCCCTACTAAAGCTAAAAAAACAAAAAACTCTCAT AATGAAGAAGATTTTAATATAAATATAATAAAAAAAAGCAAGATGAAGTCAGTTGGCAATTTTAGCAGCATTAATGATTC TAATAGACAAAAAAAAGTATCTCAAAACTACAACATAAATAACTTTGATGACATTGAAGGAAATCGAGATAAAATTTATA TAGGTAGTGAAAACTCCATAGAAGACAAAAAAAAAACTGAAGTTGATAAAAATGCTCAACTGCTTGCATTTGTACAAGAT GGGTGGCATGGACAAGAAGATTTAAATTACAATAATCAATCAGCTTTTATTCTTAGTAAAACAATAGGGTTAGATAATAT ACCTGAGTAA
Upstream 100 bases:
>100_bases ATTACTTCTAATAATCAGTCAGCAATGAATACTATAGGAGAATTAGCTTTTAATATTCAGATTTAGTGTAATAGTAATAC AAAATTAAAATATATCAAAA
Downstream 100 bases:
>100_bases GCCTTTAAACTTCAATTTAGGATAAAGTATAGGAAGAGAAAGAATAGGAGATAAGATTAGGATTAAGTTGTAGATAGAAT AACTAGCAAGAGAAGCAATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 829; Mature: 828
Protein sequence:
>829_residues MGNKSELIEIFLNDYNHFEKSLTKIFYKIPIARNTNNEDFWMFIFIGSTLTILNSELRKSVKSICYSITNNNILRLAFNF NNKIILRSISIGSNDKVSKKYQYSNQDLDQIKELFSYDKIINLKSTCSKHLHIKIIRGKTIKKPKISVVCTDNIEEGDYN ASSKFINVNSLDMKGKTLDEYLEFIRPTNSNNDDDNDDEQDYTENVEQLFNCFKDLYKQGQGIFGTSESRYHGFVYGALV LNFKQKYSMDVYVEQSAGRGYLDLYLLCKHYNHNQIANADAVKIIAEFKNGNNKYPSVADAIKQVEDRCYAQLVGRTQSN KTIIVGADFGDITKQVQAKFMLLDKLPERDFITFIADSKTQLSKANIKEEIRWIFKSTRSEESLAKILLGELLSSKVQKK SAVFLNKIDNDETKASIFILKLSNNNIILSTIEKDDKPLQKYCRLGSTRLQSRHNKEVNVTDEVEYAVRYIQKQYKINSG TKITIIVNRKGQNYETYLESIDMTNLNSNPADTDVGYNIKDYITQPYNIKHNIDVCKLILELLQDIQDDKLGELAKFKDE LCEFQAFITEERDFQAILHGLFSFKKFENTTLRAISEVTFGTGKADLVLASNRSILYFELALLKEHNVDTLLNKKKQQLD KYLVNAKVITNDKNANGVVLIFDSKTGKLYNRYHTTPVEHSSDEGGQTPIYNQRETLEPRLLSPIDQNSPTKAKKTKNSH NEEDFNINIIKKSKMKSVGNFSSINDSNRQKKVSQNYNINNFDDIEGNRDKIYIGSENSIEDKKKTEVDKNAQLLAFVQD GWHGQEDLNYNNQSAFILSKTIGLDNIPE
Sequences:
>Translated_829_residues MGNKSELIEIFLNDYNHFEKSLTKIFYKIPIARNTNNEDFWMFIFIGSTLTILNSELRKSVKSICYSITNNNILRLAFNF NNKIILRSISIGSNDKVSKKYQYSNQDLDQIKELFSYDKIINLKSTCSKHLHIKIIRGKTIKKPKISVVCTDNIEEGDYN ASSKFINVNSLDMKGKTLDEYLEFIRPTNSNNDDDNDDEQDYTENVEQLFNCFKDLYKQGQGIFGTSESRYHGFVYGALV LNFKQKYSMDVYVEQSAGRGYLDLYLLCKHYNHNQIANADAVKIIAEFKNGNNKYPSVADAIKQVEDRCYAQLVGRTQSN KTIIVGADFGDITKQVQAKFMLLDKLPERDFITFIADSKTQLSKANIKEEIRWIFKSTRSEESLAKILLGELLSSKVQKK SAVFLNKIDNDETKASIFILKLSNNNIILSTIEKDDKPLQKYCRLGSTRLQSRHNKEVNVTDEVEYAVRYIQKQYKINSG TKITIIVNRKGQNYETYLESIDMTNLNSNPADTDVGYNIKDYITQPYNIKHNIDVCKLILELLQDIQDDKLGELAKFKDE LCEFQAFITEERDFQAILHGLFSFKKFENTTLRAISEVTFGTGKADLVLASNRSILYFELALLKEHNVDTLLNKKKQQLD KYLVNAKVITNDKNANGVVLIFDSKTGKLYNRYHTTPVEHSSDEGGQTPIYNQRETLEPRLLSPIDQNSPTKAKKTKNSH NEEDFNINIIKKSKMKSVGNFSSINDSNRQKKVSQNYNINNFDDIEGNRDKIYIGSENSIEDKKKTEVDKNAQLLAFVQD GWHGQEDLNYNNQSAFILSKTIGLDNIPE >Mature_828_residues GNKSELIEIFLNDYNHFEKSLTKIFYKIPIARNTNNEDFWMFIFIGSTLTILNSELRKSVKSICYSITNNNILRLAFNFN NKIILRSISIGSNDKVSKKYQYSNQDLDQIKELFSYDKIINLKSTCSKHLHIKIIRGKTIKKPKISVVCTDNIEEGDYNA SSKFINVNSLDMKGKTLDEYLEFIRPTNSNNDDDNDDEQDYTENVEQLFNCFKDLYKQGQGIFGTSESRYHGFVYGALVL NFKQKYSMDVYVEQSAGRGYLDLYLLCKHYNHNQIANADAVKIIAEFKNGNNKYPSVADAIKQVEDRCYAQLVGRTQSNK TIIVGADFGDITKQVQAKFMLLDKLPERDFITFIADSKTQLSKANIKEEIRWIFKSTRSEESLAKILLGELLSSKVQKKS AVFLNKIDNDETKASIFILKLSNNNIILSTIEKDDKPLQKYCRLGSTRLQSRHNKEVNVTDEVEYAVRYIQKQYKINSGT KITIIVNRKGQNYETYLESIDMTNLNSNPADTDVGYNIKDYITQPYNIKHNIDVCKLILELLQDIQDDKLGELAKFKDEL CEFQAFITEERDFQAILHGLFSFKKFENTTLRAISEVTFGTGKADLVLASNRSILYFELALLKEHNVDTLLNKKKQQLDK YLVNAKVITNDKNANGVVLIFDSKTGKLYNRYHTTPVEHSSDEGGQTPIYNQRETLEPRLLSPIDQNSPTKAKKTKNSHN EEDFNINIIKKSKMKSVGNFSSINDSNRQKKVSQNYNINNFDDIEGNRDKIYIGSENSIEDKKKTEVDKNAQLLAFVQDG WHGQEDLNYNNQSAFILSKTIGLDNIPE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 95233; Mature: 95102
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: PS00185 IPNS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNKSELIEIFLNDYNHFEKSLTKIFYKIPIARNTNNEDFWMFIFIGSTLTILNSELRKS CCCHHHHHHHHHHHHHHHHHHHHHHHHEECEECCCCCCCEEEEEEECCHHHHHHHHHHHH VKSICYSITNNNILRLAFNFNNKIILRSISIGSNDKVSKKYQYSNQDLDQIKELFSYDKI HHHHHHHHCCCCEEEEEEECCCEEEEEEEECCCCCCCCHHHCCCCCCHHHHHHHHHHHHH INLKSTCSKHLHIKIIRGKTIKKPKISVVCTDNIEEGDYNASSKFINVNSLDMKGKTLDE CCCHHHCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCHHH YLEFIRPTNSNNDDDNDDEQDYTENVEQLFNCFKDLYKQGQGIFGTSESRYHGFVYGALV HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHH LNFKQKYSMDVYVEQSAGRGYLDLYLLCKHYNHNQIANADAVKIIAEFKNGNNKYPSVAD HHHHHHCCEEEEEECCCCCCCEEEEEEEHHCCCCCCCCCHHEEEEEECCCCCCCCCHHHH AIKQVEDRCYAQLVGRTQSNKTIIVGADFGDITKQVQAKFMLLDKLPERDFITFIADSKT HHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCH QLSKANIKEEIRWIFKSTRSEESLAKILLGELLSSKVQKKSAVFLNKIDNDETKASIFIL HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE KLSNNNIILSTIEKDDKPLQKYCRLGSTRLQSRHNKEVNVTDEVEYAVRYIQKQYKINSG EECCCCEEEEECCCCCHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC TKITIIVNRKGQNYETYLESIDMTNLNSNPADTDVGYNIKDYITQPYNIKHNIDVCKLIL CEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHH ELLQDIQDDKLGELAKFKDELCEFQAFITEERDFQAILHGLFSFKKFENTTLRAISEVTF HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHC GTGKADLVLASNRSILYFELALLKEHNVDTLLNKKKQQLDKYLVNAKVITNDKNANGVVL CCCCEEEEEECCCCEEEEEEEEHHCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEE IFDSKTGKLYNRYHTTPVEHSSDEGGQTPIYNQRETLEPRLLSPIDQNSPTKAKKTKNSH EEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCHHCCCCCCCCCCCHHHCCCCC NEEDFNINIIKKSKMKSVGNFSSINDSNRQKKVSQNYNINNFDDIEGNRDKIYIGSENSI CCCCEEEEEEEHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCC EDKKKTEVDKNAQLLAFVQDGWHGQEDLNYNNQSAFILSKTIGLDNIPE CCHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCC >Mature Secondary Structure GNKSELIEIFLNDYNHFEKSLTKIFYKIPIARNTNNEDFWMFIFIGSTLTILNSELRKS CCHHHHHHHHHHHHHHHHHHHHHHHHEECEECCCCCCCEEEEEEECCHHHHHHHHHHHH VKSICYSITNNNILRLAFNFNNKIILRSISIGSNDKVSKKYQYSNQDLDQIKELFSYDKI HHHHHHHHCCCCEEEEEEECCCEEEEEEEECCCCCCCCHHHCCCCCCHHHHHHHHHHHHH INLKSTCSKHLHIKIIRGKTIKKPKISVVCTDNIEEGDYNASSKFINVNSLDMKGKTLDE CCCHHHCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCHHH YLEFIRPTNSNNDDDNDDEQDYTENVEQLFNCFKDLYKQGQGIFGTSESRYHGFVYGALV HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHH LNFKQKYSMDVYVEQSAGRGYLDLYLLCKHYNHNQIANADAVKIIAEFKNGNNKYPSVAD HHHHHHCCEEEEEECCCCCCCEEEEEEEHHCCCCCCCCCHHEEEEEECCCCCCCCCHHHH AIKQVEDRCYAQLVGRTQSNKTIIVGADFGDITKQVQAKFMLLDKLPERDFITFIADSKT HHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCH QLSKANIKEEIRWIFKSTRSEESLAKILLGELLSSKVQKKSAVFLNKIDNDETKASIFIL HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE KLSNNNIILSTIEKDDKPLQKYCRLGSTRLQSRHNKEVNVTDEVEYAVRYIQKQYKINSG EECCCCEEEEECCCCCHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC TKITIIVNRKGQNYETYLESIDMTNLNSNPADTDVGYNIKDYITQPYNIKHNIDVCKLIL CEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHH ELLQDIQDDKLGELAKFKDELCEFQAFITEERDFQAILHGLFSFKKFENTTLRAISEVTF HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHC GTGKADLVLASNRSILYFELALLKEHNVDTLLNKKKQQLDKYLVNAKVITNDKNANGVVL CCCCEEEEEECCCCEEEEEEEEHHCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEE IFDSKTGKLYNRYHTTPVEHSSDEGGQTPIYNQRETLEPRLLSPIDQNSPTKAKKTKNSH EEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCHHCCCCCCCCCCCHHHCCCCC NEEDFNINIIKKSKMKSVGNFSSINDSNRQKKVSQNYNINNFDDIEGNRDKIYIGSENSI CCCCEEEEEEEHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCC EDKKKTEVDKNAQLLAFVQDGWHGQEDLNYNNQSAFILSKTIGLDNIPE CCHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA