Definition Orientia tsutsugamushi Boryong, complete genome.
Accession NC_009488
Length 2,127,051

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The map label for this gene is rhp2

Identifier: 148284757

GI number: 148284757

Start: 1360018

End: 1362366

Strand: Direct

Name: rhp2

Synonym: OTBS_1402

Alternate gene names: NA

Gene position: 1360018-1362366 (Clockwise)

Preceding gene: 148284755

Following gene: 148284760

Centisome position: 63.94

GC content: 32.87

Gene sequence:

>2349_bases
ATGCTGGAAAAACTTCCAGCAGTTAAGAAGTATATTCACAATATTCTTAAAAGTCATCGTTATTTTGAACCAGATTTTAC
GCTTCTATTTGCTAAAACAGGTAATATCTATACAAGTATAGAATATGTTAAAATACTGATACAACATGGTACTATTTCAG
CATCTAACATTTCTAGTCTCTTACATAATCATACAACAGCAACAGTAAAAATATTAGCACTGCTATTACCTAAATTAGCA
GATTCTAGAGTAGAATGCCTAAAGAAATATGGTATCCCTTTTTCTAGCATTGTCAGTATTTTAAGAGATGAGTTACATAG
TGATCTACTAAATAGTTTAGAAAAAATATTAGATACATTATGCATCCTAAGACCAGATGGCACTTATACAATATCAACTC
AGTTAACAAAAATGTTAGAATGCTGTAAGTGTCAATTTTCTAGTATTACTGTTATCTTACGTGGAATGCCCCATAATACT
AGCGATGCTTTAGAAAAGCTATTAAAGGTATTAGAAGGCCCTAGAATACAACAACTAAATGATCAGGGAATTCGATTTTC
TAATATTAGTAGCATCTTAGCTGGAGCTGGTGCAGCTGGCCCACAAGCTTTAGAAAAGCTATTAAAGGTATTAGAAAGTT
CTAGAATACAAGAACTAACTAAGCTTGGAATTCAATTTTCTAATATTAGTAGCATCTTAAATGGAGCTGGTGCAGCTGGC
CCACAAGCTTTAGAAAAGCTATTAAAGGTATTAGAAAGTTCTAGAATACAAGAACTAACTAAGCTTGGAATTCAATTTTC
TAATATTAGTCACATCTTAAATGGAGCTGGTGCAGCTGCAGCAGAAGCTTTAGAAAAGCTATTACAGATATTAGATAAAA
AAGCACTTATGTTACTGCAGAAATATGAAATCAAATTTTCTAATTTTTGTACTATTTTAAGTAGTGCTAGAGCTAAGATA
ACAGAGACTGTTCAAGAGGTATTAGAAATATTATCAGATCAGCAAATAAATAAGATCGGTAAGAAACAATTTTTTCAGAA
TATTGCAAAATTTGCTAAAAGCGGCTCTAAGGCTCCGGCTATCTTCAAAAAATTTTTGTCATCATTATCATATGATGACA
CTACACAACAAACAGAAGAAGATACTGATACTACTAATCAGCTTGAACAACAAGATGATGATATACAAGAATTGCCAAGT
ACTTCAACGAAAGAGTCTAGTACTAATATTGAGATGATGGAATCTGTGGCTATATCTTCATCAGATTTAGAAGAAGGGCT
TAAGTTAGTTACGGATGTTATAAGTCAAAATTGTGGATCTTCTTCTAGCATTACAGCAGATATAAGTCCTAATATTTACA
TGGCAGAAGAAGAATATATTAATAGTATTATTCCAGATTTGGAGCAACAAAGTAGTAATATATTACCTGATCCTGATTAT
TATACAGCTTATAATGAAGGCATGAAATTTGGACTAAACCATAGTTATGCAAGTATCTATGCCTCTATTGTTAGCAAGCA
TATGGCTCATGGAATAACGGAACATTCTGCCAAATTTTTTGCTCAAAGCTATATTGAAGGTTTAAGTTTGTCTATTGAAA
TTCATCAAAAGGGAGAATGTTATGCTCACAACTATGCTGAAGCTTACGCTGATTGTATAAGTAGTGGTAAACAACCAGAG
TATGCTAAAAACTATGCTGAACTTTTTGCTGATGCTATAGCAAGTGGAAAAGATCCTGATTATGCTCGAAACTATGCTGA
AGATAATGCAGATTTTATGTTTTTTGAACAATCTGAAGCTACTCAAGAGCATATTTTGGAGCAAATGAGTGCTAATGTTG
ATAGTATTATTCCAGATTTGGAGCAACAAAGTAGTAATATATTATCTGATCCTAATGATGATTATTCTAGAGCTTATAAC
GAAGGCATGCAATTTGGACTAAACCATAGTTATGCAAGTATCTATGCTTCTATTGTTAGCAAGCATATGGCTCATGGAAT
AACGGAACATTCTGCCAAATTTTTTGCTCAAAGCTATATCGAAGGTTTTAGTTGGTCTATTGAAAATCATCAAAAGGGAG
ATTGTCATGCTCGCAACTATGCTGAAGCTTACGCTGATTGCCTAAGTAGTGGTAAAAAACCAGAGTATGCTAAAAACTAT
GCTGAACTTTTTGCTGATGCTATAGCAAGTGGAAAAGATCCTGATTATGCTCGAAACTATGCTGAAGATAATGCAGATTT
TATGTTTTTTGAACAATCTGAAGCTACTCAAGAGCATATTTTGGAGCAAATGAGTGCTAATGTTGACCATACTGGAGGTG
GTATTTTTAATAATAATGTTGAACAATAG

Upstream 100 bases:

>100_bases
CTTACAAACGATTAATCACTTGAGACCTGAACAGCCTAAAATACTAACTAATACGTGTAATCTAGAAGAATATCTTAATC
ATAATGCCGAAGTAAAAGAT

Downstream 100 bases:

>100_bases
ATTAGCACTACCAACAAAGATATAATTTTCAATCTTAGCTTGATATAAGAAAAATAGCAATAGGAATAAGTATTAACCAG
ATTATGTAACTGTTACTCAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 782; Mature: 782

Protein sequence:

>782_residues
MLEKLPAVKKYIHNILKSHRYFEPDFTLLFAKTGNIYTSIEYVKILIQHGTISASNISSLLHNHTTATVKILALLLPKLA
DSRVECLKKYGIPFSSIVSILRDELHSDLLNSLEKILDTLCILRPDGTYTISTQLTKMLECCKCQFSSITVILRGMPHNT
SDALEKLLKVLEGPRIQQLNDQGIRFSNISSILAGAGAAGPQALEKLLKVLESSRIQELTKLGIQFSNISSILNGAGAAG
PQALEKLLKVLESSRIQELTKLGIQFSNISHILNGAGAAAAEALEKLLQILDKKALMLLQKYEIKFSNFCTILSSARAKI
TETVQEVLEILSDQQINKIGKKQFFQNIAKFAKSGSKAPAIFKKFLSSLSYDDTTQQTEEDTDTTNQLEQQDDDIQELPS
TSTKESSTNIEMMESVAISSSDLEEGLKLVTDVISQNCGSSSSITADISPNIYMAEEEYINSIIPDLEQQSSNILPDPDY
YTAYNEGMKFGLNHSYASIYASIVSKHMAHGITEHSAKFFAQSYIEGLSLSIEIHQKGECYAHNYAEAYADCISSGKQPE
YAKNYAELFADAIASGKDPDYARNYAEDNADFMFFEQSEATQEHILEQMSANVDSIIPDLEQQSSNILSDPNDDYSRAYN
EGMQFGLNHSYASIYASIVSKHMAHGITEHSAKFFAQSYIEGFSWSIENHQKGDCHARNYAEAYADCLSSGKKPEYAKNY
AELFADAIASGKDPDYARNYAEDNADFMFFEQSEATQEHILEQMSANVDHTGGGIFNNNVEQ

Sequences:

>Translated_782_residues
MLEKLPAVKKYIHNILKSHRYFEPDFTLLFAKTGNIYTSIEYVKILIQHGTISASNISSLLHNHTTATVKILALLLPKLA
DSRVECLKKYGIPFSSIVSILRDELHSDLLNSLEKILDTLCILRPDGTYTISTQLTKMLECCKCQFSSITVILRGMPHNT
SDALEKLLKVLEGPRIQQLNDQGIRFSNISSILAGAGAAGPQALEKLLKVLESSRIQELTKLGIQFSNISSILNGAGAAG
PQALEKLLKVLESSRIQELTKLGIQFSNISHILNGAGAAAAEALEKLLQILDKKALMLLQKYEIKFSNFCTILSSARAKI
TETVQEVLEILSDQQINKIGKKQFFQNIAKFAKSGSKAPAIFKKFLSSLSYDDTTQQTEEDTDTTNQLEQQDDDIQELPS
TSTKESSTNIEMMESVAISSSDLEEGLKLVTDVISQNCGSSSSITADISPNIYMAEEEYINSIIPDLEQQSSNILPDPDY
YTAYNEGMKFGLNHSYASIYASIVSKHMAHGITEHSAKFFAQSYIEGLSLSIEIHQKGECYAHNYAEAYADCISSGKQPE
YAKNYAELFADAIASGKDPDYARNYAEDNADFMFFEQSEATQEHILEQMSANVDSIIPDLEQQSSNILSDPNDDYSRAYN
EGMQFGLNHSYASIYASIVSKHMAHGITEHSAKFFAQSYIEGFSWSIENHQKGDCHARNYAEAYADCLSSGKKPEYAKNY
AELFADAIASGKDPDYARNYAEDNADFMFFEQSEATQEHILEQMSANVDHTGGGIFNNNVEQ
>Mature_782_residues
MLEKLPAVKKYIHNILKSHRYFEPDFTLLFAKTGNIYTSIEYVKILIQHGTISASNISSLLHNHTTATVKILALLLPKLA
DSRVECLKKYGIPFSSIVSILRDELHSDLLNSLEKILDTLCILRPDGTYTISTQLTKMLECCKCQFSSITVILRGMPHNT
SDALEKLLKVLEGPRIQQLNDQGIRFSNISSILAGAGAAGPQALEKLLKVLESSRIQELTKLGIQFSNISSILNGAGAAG
PQALEKLLKVLESSRIQELTKLGIQFSNISHILNGAGAAAAEALEKLLQILDKKALMLLQKYEIKFSNFCTILSSARAKI
TETVQEVLEILSDQQINKIGKKQFFQNIAKFAKSGSKAPAIFKKFLSSLSYDDTTQQTEEDTDTTNQLEQQDDDIQELPS
TSTKESSTNIEMMESVAISSSDLEEGLKLVTDVISQNCGSSSSITADISPNIYMAEEEYINSIIPDLEQQSSNILPDPDY
YTAYNEGMKFGLNHSYASIYASIVSKHMAHGITEHSAKFFAQSYIEGLSLSIEIHQKGECYAHNYAEAYADCISSGKQPE
YAKNYAELFADAIASGKDPDYARNYAEDNADFMFFEQSEATQEHILEQMSANVDSIIPDLEQQSSNILSDPNDDYSRAYN
EGMQFGLNHSYASIYASIVSKHMAHGITEHSAKFFAQSYIEGFSWSIENHQKGDCHARNYAEAYADCLSSGKKPEYAKNY
AELFADAIASGKDPDYARNYAEDNADFMFFEQSEATQEHILEQMSANVDHTGGGIFNNNVEQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 86738; Mature: 86738

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEKLPAVKKYIHNILKSHRYFEPDFTLLFAKTGNIYTSIEYVKILIQHGTISASNISSL
CCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHH
LHNHTTATVKILALLLPKLADSRVECLKKYGIPFSSIVSILRDELHSDLLNSLEKILDTL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
CILRPDGTYTISTQLTKMLECCKCQFSSITVILRGMPHNTSDALEKLLKVLEGPRIQQLN
HEECCCCCEEHHHHHHHHHHHHHCCHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCHHCC
DQGIRFSNISSILAGAGAAGPQALEKLLKVLESSRIQELTKLGIQFSNISSILNGAGAAG
CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
PQALEKLLKVLESSRIQELTKLGIQFSNISHILNGAGAAAAEALEKLLQILDKKALMLLQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
KYEIKFSNFCTILSSARAKITETVQEVLEILSDQQINKIGKKQFFQNIAKFAKSGSKAPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
IFKKFLSSLSYDDTTQQTEEDTDTTNQLEQQDDDIQELPSTSTKESSTNIEMMESVAISS
HHHHHHHHCCCCCCHHHCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCH
SDLEEGLKLVTDVISQNCGSSSSITADISPNIYMAEEEYINSIIPDLEQQSSNILPDPDY
HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEECHHHHHHHHCCCHHHHCCCCCCCCCC
YTAYNEGMKFGLNHSYASIYASIVSKHMAHGITEHSAKFFAQSYIEGLSLSIEIHQKGEC
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEEECCCCH
YAHNYAEAYADCISSGKQPEYAKNYAELFADAIASGKDPDYARNYAEDNADFMFFEQSEA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEEECCHH
TQEHILEQMSANVDSIIPDLEQQSSNILSDPNDDYSRAYNEGMQFGLNHSYASIYASIVS
HHHHHHHHHHCCHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
KHMAHGITEHSAKFFAQSYIEGFSWSIENHQKGDCHARNYAEAYADCLSSGKKPEYAKNY
HHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
AELFADAIASGKDPDYARNYAEDNADFMFFEQSEATQEHILEQMSANVDHTGGGIFNNNV
HHHHHHHHHCCCCCHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCC
EQ
CC
>Mature Secondary Structure
MLEKLPAVKKYIHNILKSHRYFEPDFTLLFAKTGNIYTSIEYVKILIQHGTISASNISSL
CCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHH
LHNHTTATVKILALLLPKLADSRVECLKKYGIPFSSIVSILRDELHSDLLNSLEKILDTL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
CILRPDGTYTISTQLTKMLECCKCQFSSITVILRGMPHNTSDALEKLLKVLEGPRIQQLN
HEECCCCCEEHHHHHHHHHHHHHCCHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCHHCC
DQGIRFSNISSILAGAGAAGPQALEKLLKVLESSRIQELTKLGIQFSNISSILNGAGAAG
CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
PQALEKLLKVLESSRIQELTKLGIQFSNISHILNGAGAAAAEALEKLLQILDKKALMLLQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
KYEIKFSNFCTILSSARAKITETVQEVLEILSDQQINKIGKKQFFQNIAKFAKSGSKAPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
IFKKFLSSLSYDDTTQQTEEDTDTTNQLEQQDDDIQELPSTSTKESSTNIEMMESVAISS
HHHHHHHHCCCCCCHHHCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCH
SDLEEGLKLVTDVISQNCGSSSSITADISPNIYMAEEEYINSIIPDLEQQSSNILPDPDY
HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEECHHHHHHHHCCCHHHHCCCCCCCCCC
YTAYNEGMKFGLNHSYASIYASIVSKHMAHGITEHSAKFFAQSYIEGLSLSIEIHQKGEC
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEEECCCCH
YAHNYAEAYADCISSGKQPEYAKNYAELFADAIASGKDPDYARNYAEDNADFMFFEQSEA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEEECCHH
TQEHILEQMSANVDSIIPDLEQQSSNILSDPNDDYSRAYNEGMQFGLNHSYASIYASIVS
HHHHHHHHHHCCHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
KHMAHGITEHSAKFFAQSYIEGFSWSIENHQKGDCHARNYAEAYADCLSSGKKPEYAKNY
HHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
AELFADAIASGKDPDYARNYAEDNADFMFFEQSEATQEHILEQMSANVDHTGGGIFNNNV
HHHHHHHHHCCCCCHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCC
EQ
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA