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The map label for this gene is int [H]

Identifier: 148284245

GI number: 148284245

Start: 394300

End: 395544

Strand: Direct

Name: int [H]

Synonym: OTBS_0415

Alternate gene names: 148284245

Gene position: 394300-395544 (Clockwise)

Preceding gene: 148284244

Following gene: 148284246

Centisome position: 18.54

GC content: 32.53

Gene sequence:

>1245_bases
GTGATTATGACTTCAATATCATCAAAGTTTATAAATCGAGCACTACGTAAAATTAAAATTCCTAAGGGAGAAAAACTATT
AATTATCCACGATCCAGATATAATAGGACTTAAACTGAAAATCTCATGTACAGTCTGTGGAGGAATAGTAAGAAAAACAT
GGATTTTAGAACAAAAATATAAAAACCAGAGTTTAAAAATAAGGATAGTGGAATTTCCATATTTATCTATTAAAGAAGCT
AGAAAAATAGCAAGAGAATTAAAGACATTAATGGCGAACGGAATAGATCCAAGAGCAGTAAAACATCAACAACAGATAGA
AGAAAATGAGAATCGTATAAAAGAAAGAGAAAGAAAAGCTAACGATATTACATTCAAAGAGCTGTGTTATAAGTATATTG
AAGAGTATGCCAAAATATATACTATAAACTGGAAAGAGAATGCTGACAGAGTACATACTTATGCACAAGCATTATATGAA
AAAAAGATAAGCAAGATTCGAATGAGTGATATTGAACCAATATTCAATGATATCAGCAAAGAGGGAAAATATGCCACAGC
AAATGCATTGCTAGCAACCTTACGCACTATATTTAATAAGGCAATAAAATGGGGATTAATAGAAAACAATCCTACTCTAG
GGATAGAGCAGCATAAACTGCAAGCAAGAGAGAGACGTCTAAGTTACGATGAAATGGGTAGATTTTTACAAGTATTATGC
GGAGAAGCAAGTCCATTGATAAGAGATTTTGCATTACTAGCGTTATATACTGGAGCTAGAAAAAGTAATGTGTTAGAGAT
GGAATGGGACAATATAGATTTTGAAAGAAAAATATGGCATATACCAAAAACTAAGAACGGAAAGGCGCAAAATATACCAT
TAACAGATGAGGCAATGGAAATATTGCAAGCAAGGAAATTAATATCTACAAGTAAATGGGTACTACCAAGTTCTACTAGC
GAAAGCGGACACTTATCGCATCCAAATACCGCATGGAAGATAATTTGTGAAAAGGCAAGCATAAAAAATTTCAGAATACA
CGATCTAAGAAGGACGTTTGCAAGTTGTATGGGGGATGCAGGCGAAAGTCAGAGGACAATTAGTATAGCATTGAATCATA
TTAATCCAAACTCAACAATACCTTATACTATAGCTTGTATGGAGTTAGTACGAGAGTATATGTCTAAGGCTATACAAATA
ATTAGTGAATGTGCTAGAAGTTATAATATTTATAATACTATCTGA

Upstream 100 bases:

>100_bases
CAAATTAGTATAAAAATTTGCTATCAAATAAAAAGTATAATATAGATCATCTGTTTAATTAAACGTAATACTTTAATAAT
AAATATTAATATTATGTGGG

Downstream 100 bases:

>100_bases
CTGATATAAACGTTGTGGTAAGAATAGTGCGATTTCATGTCGCACATGCATATATGAACACTAATTATTGCAGGTAAAAT
CTGTGTTTGAAGATATTTAG

Product: phage-related integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MIMTSISSKFINRALRKIKIPKGEKLLIIHDPDIIGLKLKISCTVCGGIVRKTWILEQKYKNQSLKIRIVEFPYLSIKEA
RKIARELKTLMANGIDPRAVKHQQQIEENENRIKERERKANDITFKELCYKYIEEYAKIYTINWKENADRVHTYAQALYE
KKISKIRMSDIEPIFNDISKEGKYATANALLATLRTIFNKAIKWGLIENNPTLGIEQHKLQARERRLSYDEMGRFLQVLC
GEASPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQARKLISTSKWVLPSSTS
ESGHLSHPNTAWKIICEKASIKNFRIHDLRRTFASCMGDAGESQRTISIALNHINPNSTIPYTIACMELVREYMSKAIQI
ISECARSYNIYNTI

Sequences:

>Translated_414_residues
MIMTSISSKFINRALRKIKIPKGEKLLIIHDPDIIGLKLKISCTVCGGIVRKTWILEQKYKNQSLKIRIVEFPYLSIKEA
RKIARELKTLMANGIDPRAVKHQQQIEENENRIKERERKANDITFKELCYKYIEEYAKIYTINWKENADRVHTYAQALYE
KKISKIRMSDIEPIFNDISKEGKYATANALLATLRTIFNKAIKWGLIENNPTLGIEQHKLQARERRLSYDEMGRFLQVLC
GEASPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQARKLISTSKWVLPSSTS
ESGHLSHPNTAWKIICEKASIKNFRIHDLRRTFASCMGDAGESQRTISIALNHINPNSTIPYTIACMELVREYMSKAIQI
ISECARSYNIYNTI
>Mature_414_residues
MIMTSISSKFINRALRKIKIPKGEKLLIIHDPDIIGLKLKISCTVCGGIVRKTWILEQKYKNQSLKIRIVEFPYLSIKEA
RKIARELKTLMANGIDPRAVKHQQQIEENENRIKERERKANDITFKELCYKYIEEYAKIYTINWKENADRVHTYAQALYE
KKISKIRMSDIEPIFNDISKEGKYATANALLATLRTIFNKAIKWGLIENNPTLGIEQHKLQARERRLSYDEMGRFLQVLC
GEASPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQARKLISTSKWVLPSSTS
ESGHLSHPNTAWKIICEKASIKNFRIHDLRRTFASCMGDAGESQRTISIALNHINPNSTIPYTIACMELVREYMSKAIQI
ISECARSYNIYNTI

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=336, Percent_Identity=23.8095238095238, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788974, Length=325, Percent_Identity=22.1538461538462, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788690, Length=370, Percent_Identity=20.5405405405405, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47867; Mature: 47867

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMTSISSKFINRALRKIKIPKGEKLLIIHDPDIIGLKLKISCTVCGGIVRKTWILEQKY
CCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEEEEEEHHHHHHHHHHHHHHHH
KNQSLKIRIVEFPYLSIKEARKIARELKTLMANGIDPRAVKHQQQIEENENRIKERERKA
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
NDITFKELCYKYIEEYAKIYTINWKENADRVHTYAQALYEKKISKIRMSDIEPIFNDISK
CCCCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGKYATANALLATLRTIFNKAIKWGLIENNPTLGIEQHKLQARERRLSYDEMGRFLQVLC
CCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
GEASPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAME
CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHEEECCCCCCCCCCCCCCCHHHHH
ILQARKLISTSKWVLPSSTSESGHLSHPNTAWKIICEKASIKNFRIHDLRRTFASCMGDA
HHHHHHHHHCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC
GESQRTISIALNHINPNSTIPYTIACMELVREYMSKAIQIISECARSYNIYNTI
CCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIMTSISSKFINRALRKIKIPKGEKLLIIHDPDIIGLKLKISCTVCGGIVRKTWILEQKY
CCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEEEEEEHHHHHHHHHHHHHHHH
KNQSLKIRIVEFPYLSIKEARKIARELKTLMANGIDPRAVKHQQQIEENENRIKERERKA
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
NDITFKELCYKYIEEYAKIYTINWKENADRVHTYAQALYEKKISKIRMSDIEPIFNDISK
CCCCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGKYATANALLATLRTIFNKAIKWGLIENNPTLGIEQHKLQARERRLSYDEMGRFLQVLC
CCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
GEASPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAME
CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHEEECCCCCCCCCCCCCCCHHHHH
ILQARKLISTSKWVLPSSTSESGHLSHPNTAWKIICEKASIKNFRIHDLRRTFASCMGDA
HHHHHHHHHCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC
GESQRTISIALNHINPNSTIPYTIACMELVREYMSKAIQIISECARSYNIYNTI
CCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]